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functions
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added functions dir for further tidying and tested this with ind scripts for stability
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2021-06-09 18:13:18 +01:00 |
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myshiny
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added functions dir for further tidying and tested this with ind scripts for stability
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2021-06-09 18:13:18 +01:00 |
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scratch_plots
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added scratch_plots/ggpairs_test.R to play with ggally for future
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2020-09-17 15:32:40 +01:00 |
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barplot_colour_function.R
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sorted subcols_axis script to generate correct axis cols for both PS and lig plots
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2020-08-26 16:39:10 +01:00 |
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barplots_subcolours_aa_combined.R
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changing labels in graphs for frontiers journal
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2020-10-09 13:10:08 +01:00 |
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barplots_subcolours_aa_LIG.R
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adjusted x axis position label for barplot_subcols_aa_LIG.R
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2020-10-06 18:42:24 +01:00 |
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barplots_subcolours_aa_PS.R
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adjusted x axis position label for barplot_subcols_aa_LIG.R
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2020-10-06 18:42:24 +01:00 |
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barplots_subcolours_PS.R
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sorted subcols_axis script to generate correct axis cols for both PS and lig plots
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2020-08-26 16:39:10 +01:00 |
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basic_barplots_combined.R
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renamed other_plots.R to other_plots_combined.R and changing labels to capital letters for journal
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2020-10-09 12:17:24 +01:00 |
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basic_barplots_foldx.R
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added functions dir for further tidying and tested this with ind scripts for stability
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2021-06-09 18:13:18 +01:00 |
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basic_barplots_LIG.R
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added functions dir for further tidying and tested this with ind scripts for stability
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2021-06-09 18:13:18 +01:00 |
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basic_barplots_PS.R
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added functions dir for further tidying and tested this with ind scripts for stability
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2021-06-09 18:13:18 +01:00 |
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combining_dfs_plotting.R
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write merged_df3 files from combining_dfs_plotting
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2020-09-11 09:51:53 +01:00 |
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combining_two_df_FIXME.R
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Merge branch 'master' of github.com:tgttunstall/LSHTM_analysis
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2020-09-10 16:14:46 +01:00 |
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corr_adjusted_PS_LIG.R
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saving work
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2020-09-18 11:55:08 +01:00 |
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corr_data.R
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added corr_data.R corr_PS_LIG_all.R corr_PS_LIG_v2.R
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2020-09-29 16:08:25 +01:00 |
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corr_PS_LIG.R
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output corr plots with coloured dots
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2020-10-06 17:47:24 +01:00 |
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dirs.R
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minor updates to dir.R
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2021-06-04 15:05:52 +01:00 |
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dist_plots_check.R
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renamed dist_plots.R to dist_plots_check.R as its exploratory
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2020-10-06 16:39:24 +01:00 |
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extreme_muts.R
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saving work minor changes perhaps
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2020-10-08 16:03:12 +01:00 |
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ggcorr_all_PS_LIG.R
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updated counts.py with wt seq counts
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2021-03-03 11:54:48 +00:00 |
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Header_TT.R
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updated Header file and saving work
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2020-09-17 20:12:08 +01:00 |
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hist_af_or_base.R
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added base histogram script for af and or
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2020-10-13 13:38:17 +01:00 |
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hist_af_or_combined.R
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changing labels in graphs for frontiers journal
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2020-10-09 13:10:08 +01:00 |
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legend_adjustment.R
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updated gitignore and saving workk
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2020-09-10 14:45:10 +01:00 |
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lineage_basic_barplot.R
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generated lineage dist plots combined. needs tweaking
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2020-09-09 12:53:53 +01:00 |
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lineage_dist_combined_PS.R
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updated distribution scripts to try adding points
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2020-09-15 13:33:28 +01:00 |
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lineage_dist_dm_om_combined_PS.R
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saving work and generating revised_figure7
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2021-02-20 16:17:38 +00:00 |
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logo_combined.R
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renamed other_plots.R to other_plots_combined.R and changing labels to capital letters for journal
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2020-10-09 12:17:24 +01:00 |
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logo_multiple_muts.R
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minor tweaks in logo and corr plots
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2020-09-17 20:00:34 +01:00 |
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logo_plot.R
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minor tweaks in logo and corr plots
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2020-09-17 20:00:34 +01:00 |
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mcsm_mean_stability.R
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sorted subcols_axis script to generate correct axis cols for both PS and lig plots
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2020-08-26 16:39:10 +01:00 |
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merged_df3_short.csv
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added merged_df3_short.csv for supp tables and struct figures
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2020-09-10 19:17:05 +01:00 |
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my_pairs_panel.R
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added plotting/corr_plots_style2.Radded my version of pairs.panel with lower panel turned off. Also added new script for corr plots using my version of pairs.panel
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2020-09-17 15:31:37 +01:00 |
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notes
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updated notes with supp table colnames
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2020-09-10 20:15:00 +01:00 |
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opp_mcsm_muts.R
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`resolved ambiguous muts and generated clean output. Also seaprated dir.R
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2020-09-09 11:26:13 +01:00 |
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or_plots_combined.R
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changing labels in graphs for frontiers journal
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2020-10-09 13:10:08 +01:00 |
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other_plots_combined.R
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updated count.py with indel and stop codon count
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2021-02-24 09:56:36 +00:00 |
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other_plots_data.R
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added foldx scaled and foldx outcome to plotting_data.R
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2020-09-23 11:12:41 +01:00 |
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output_tables.R
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added extreme_muts.R
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2020-09-11 16:07:23 +01:00 |
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plotting_data.R
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added shiny app and turned stability bp to function
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2021-06-09 17:05:02 +01:00 |
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plotting_globals.R
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tidied plotting_data.R as a function returning a lits of dfs
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2021-06-08 16:00:28 +01:00 |
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ps_plots_combined.R
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changing labels in graphs for frontiers journal
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2020-10-09 13:10:08 +01:00 |
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replaceBfactor_pdb.R
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generated replaced Bfactor pdbs
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2020-08-24 14:37:28 +01:00 |
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resolving_ambiguous_muts.R
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add dirs and resolving_ambiguous_muts
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2020-09-09 11:36:40 +01:00 |
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running_plot_scripts
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lineage dist plots combined generated
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2020-09-09 13:18:57 +01:00 |
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running_plotting_scripts.txt
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repuposed and ran basic_barplots for lig and foldx including filenames
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2021-06-09 11:33:08 +01:00 |
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subcols_axis.R
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renamed file to reflect sucols_axis is commons script sourced by ps and lig plots
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2020-08-26 16:40:36 +01:00 |
