156 lines
2.4 KiB
CSV
156 lines
2.4 KiB
CSV
"colnames(merged_df3)"
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"mutationinformation"
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"id"
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"sample"
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"lineage"
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"sublineage"
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"country_code"
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"drtype"
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"ethambutol"
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"mutation"
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"drug_name"
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"mutation_info"
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"mutation_info_orig"
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"mutation_info_v1"
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"wild_type"
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"mutant_type"
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"position"
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"Mut"
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"Mut_copy"
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"index_orig"
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"index_orig_copy"
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"snp_frequency"
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"pos_count"
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"wt_prop_water"
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"mut_prop_water"
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"wt_prop_polarity"
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"mut_prop_polarity"
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"wt_calcprop"
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"mut_calcprop"
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"total_id_ucount"
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"maf"
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"drtype_numeric"
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"drtype_all_vals"
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"drtype_all_names"
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"drtype_multimode"
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"drtype_mode"
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"drtype_max"
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"mutation_info_labels"
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"dm_om_numeric"
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"dm_om_numeric_orig"
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"dst"
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"dst_multimode"
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"dst_mode"
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"mutation_info_labels_v1"
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"mutation_info_labels_orig"
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"lineage_list_all"
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"lineage_count_all"
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"lineage_count_unique"
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"lineage_list_unique"
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"lineage_multimode"
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"chain"
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"ligand_id"
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"ligand_distance"
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"duet_stability_change"
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"duet_outcome"
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"ligand_affinity_change"
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"ligand_outcome"
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"duet_scaled"
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"affinity_scaled"
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"wild_pos"
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"wild_chain_pos"
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"ddg_foldx"
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"contacts"
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"electro_rr"
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"electro_mm"
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"electro_sm"
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"electro_ss"
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"disulfide_rr"
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"disulfide_mm"
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"disulfide_sm"
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"disulfide_ss"
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"hbonds_rr"
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"hbonds_mm"
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"hbonds_sm"
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"hbonds_ss"
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"partcov_rr"
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"partcov_mm"
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"partcov_sm"
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"partcov_ss"
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"vdwclashes_rr"
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"vdwclashes_mm"
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"vdwclashes_sm"
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"vdwclashes_ss"
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"volumetric_rr"
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"volumetric_mm"
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"volumetric_sm"
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"volumetric_ss"
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"foldx_scaled"
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"foldx_outcome"
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"deepddg"
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"deepddg_outcome"
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"deepddg_scaled"
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"asa"
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"rsa"
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"ss"
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"ss_class"
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"kd_values"
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"rd_values"
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"wt_3upper"
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"consurf_score"
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"consurf_scaled"
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"consurf_colour"
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"consurf_colour_rev"
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"consurf_ci_upper"
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"consurf_ci_lower"
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"consurf_ci_colour"
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"consurf_msa_data"
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"consurf_aa_variety"
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"snap2_score"
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"snap2_scaled"
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"snap2_accuracy_pc"
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"snap2_outcome"
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"af"
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"beta_logistic"
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"or_logistic"
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"pval_logistic"
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"se_logistic"
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"zval_logistic"
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"ci_low_logistic"
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"ci_hi_logistic"
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"or_mychisq"
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"log10_or_mychisq"
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"or_fisher"
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"pval_fisher"
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"neglog_pval_fisher"
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"ci_low_fisher"
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"ci_hi_fisher"
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"est_chisq"
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"pval_chisq"
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"ddg_dynamut2"
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"ddg_dynamut2_scaled"
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"ddg_dynamut2_outcome"
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"mcsm_ppi2_affinity"
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"mcsm_ppi2_scaled"
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"mcsm_ppi2_outcome"
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"interface_dist"
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"mut_3upper"
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"seq_offset4pdb"
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"provean_score"
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"provean_outcome"
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"provean_scaled"
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"mmcsm_lig"
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"mmcsm_lig_scaled"
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"mmcsm_lig_outcome"
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"gene_name"
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"pdb_file"
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"lineage_labels"
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"consurf_outcome"
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"sensitivity"
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"foldx_scaled_signC"
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"avg_stability"
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"avg_stability_outcome"
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"avg_stability_scaled"
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"avg_lig_affinity"
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"avg_lig_affinity_outcome"
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"avg_lig_affinity_scaled"
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