LSHTM_analysis/README.md

mCSM Analysis

This contains scripts that does the following:

1. mCSM analysis: using bash, python and R
2. meta data analysis: using python and R

Requires an additional 'Data' directory. Batteries not included:-)

Assumptions

1. git repos are cloned to ~/git
2. Requires a data directory with an input and output subdirs. Can be specified on the CLI with --datadir, and optionally can be created with mk_drug_dirs.sh <DRUG_NAME>

LSHTM_analysis:

subdirs within this repo

 meta\_data\_analysis/
 	*.R
 	*.py
	
 mcsm_analysis
#	<drug>/

 foldx_analysis
 
 plotting
 	*.R
 

More docs here as I write them.