LSHTM_analysis/README.md

mCSM Analysis

This repo does mCSM analysis using bash, python and R.

Requires an additional 'Data' directory. Batteries not included:-)

Assumptions

1. git repos are cloned to ~/git
2. Requires a Data/ in ~/git which has the struc created by mk_drug_dirs.sh

LSHTM_analysis:

subdirs within this repo

 meta\_data\_analysis/
 	*.R
 	*.py
	
 mcsm\_analysis/
	<drug>/ 
		scripts/
		*.R
		*.py
			mcsm/
			*.sh
			*.py
			*.R
			plotting/
			*.R

More docs here as I write them.