45 lines
872 B
Markdown
45 lines
872 B
Markdown
mCSM
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=============
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This contains scripts that does the following:
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1. mcsm.py: function for submitting mcsm job and extracting results
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2. run_mcsm.py: wrapper to call mcsm.py
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foldx
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=============
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This contains scripts that does the following:
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1. runFoldx.py: submitting foldx requests and extracting results
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2. runfoldx.sh: is wrapped by runFoldx.py
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Requires an additional 'Data' directory. Batteries not included:-)
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## Assumptions
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1. git repos are cloned to `~/git`
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2. Requires a data directory with an `input` and `output` subdirs. Can be specified on the CLI with `--datadir`, and optionally can be created with `mk_drug_dirs.sh <DRUG_NAME>`
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## LSHTM\_analysis:
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subdirs within this repo
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```
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scripts
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*.R
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*.py
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plotting/
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*.R
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mcsm
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*.py
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foldx
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*.py
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*.sh
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```
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## ML\_analysis:
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located in:
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```
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scripts/ml
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```
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More docs here as I write them.
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