tanu/LSHTM_analysis
1
0
Fork 0
Code Issues Pull requests Releases Wiki Activity

gidb_dev #1

Closed
tanu wants to merge 386 commits from gidb_dev into master
pull from: gidb_dev
merge into: tanu:master
Conversation 3 Commits 386 Files changed 175 +4 -5
2 changed files with 4 additions and 5 deletions
Download patch file Download diff file Expand all files Collapse all files
Showing only changes of commit 83383b4493 - Show all commits

2
foldx/runFoldx.py
View file

@ -110,7 +110,7 @@ infile_muts = outdir + '/' + mutation_file
#=======
# output
#=======
out_filename = gene.lower() + '_foldx_results.csv'
out_filename = gene.lower() + '_foldx.csv'
outfile_foldx = outdir + '/' + out_filename
print('Arguments being passed:'

7
scripts/or_kinship_link.py
View file

@ -52,15 +52,14 @@ gene = args.gene
drug = args.drug
gene_match = gene + '_p.'
datadir = args.datadir
datadir = args.datadir
indir = args.input_dir
outdir = args.output_dir
start_cds = args.start_coord
end_cds = args.end_coord
#=======================================================================
#%% input and output dirs and files
#%%=======================================================================
#==============
# directories
#==============
@ -464,7 +463,7 @@ else:
#%% write file
print('\n====================================================================='
, '\nWriting output file:\n', outfile_or_kin
, '\nNo.of rows:', len(dfm2_mis)
, '\nNo. of rows:', len(dfm2_mis)
, '\nNo. of cols:', len(dfm2_mis.columns))
orkin_linked.to_csv(outfile_or_kin, index = False)