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efe0178f4e
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separting data processing from plotting, started with basic_barplots_PS script
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2020-07-16 18:59:17 +01:00 |
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7d1ecbb660
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replaced single quotes with double in R scripts
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2020-07-16 14:18:18 +01:00 |
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5e1b39cea0
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mean stability values calcs and replaceBfactor plots
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2020-07-16 14:12:08 +01:00 |
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1f44f8ec0a
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calculating mean stabilty per position
please enter the commit message for your changes. Lines starting
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2020-07-16 10:37:40 +01:00 |
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1e785a08a1
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scripts generating axis coloured subcols bp for PS
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2020-07-15 16:31:10 +01:00 |
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3cb33df009
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made tweaks to output plot filenames
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2020-07-15 16:29:36 +01:00 |
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55f03bc343
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adding plots as I tidy and generate
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2020-07-15 13:50:07 +01:00 |
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e41fb78e37
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saved work before adding plots
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2020-07-15 13:36:20 +01:00 |
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e4270b67c8
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saving work for today
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2020-07-14 16:13:17 +01:00 |
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2bc5be20b9
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resolving merge conflicts dur to shoddy data
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2020-07-14 14:09:42 +01:00 |
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7d36e0e36b
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fixed white space prob with mcsm input with merge
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2020-07-14 14:07:23 +01:00 |
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83383b4493
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finding discrepancy in merging or dfs,grrrr
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2020-07-13 18:31:29 +01:00 |
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9e8469abe3
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trying to resolve copy warning in code
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2020-07-13 12:20:43 +01:00 |
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57a966c7c4
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added sanity checks for or_kinship calcs
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2020-07-13 11:37:43 +01:00 |
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f9500d5324
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added sanity checks for or_kin
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2020-07-10 15:24:57 +01:00 |
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5677175423
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refactoring or_kin script minor changes only
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2020-07-10 12:38:42 +01:00 |
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c80faef0bf
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refactoring or_kin script minor changes only
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2020-07-10 12:37:41 +01:00 |
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aaf3f5e084
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added cleaned up af_or_calcs.R
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2020-07-09 15:55:16 +01:00 |
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d3d82623d2
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added consistent style scripts to format kd & rd values
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2020-07-09 14:08:27 +01:00 |
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e4a7deae7b
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minor tidy up in foldx, mcsm and dssp scripts
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2020-07-09 14:04:16 +01:00 |
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91348aaae2
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added dssp.py with refactored argeparse
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2020-07-09 12:58:55 +01:00 |
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01fbc2a87b
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ran foldx and mcsm (get) for 33k dataset
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2020-07-08 20:30:32 +01:00 |
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0e71b23759
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modified extraction to be explicit for extracting nsSNP for specified gene
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2020-07-08 18:47:22 +01:00 |
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1fa0dc6ad4
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minor changes in data extraction
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2020-07-08 16:01:54 +01:00 |
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c958cc1081
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data extraction tidy up
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2020-07-08 13:26:33 +01:00 |
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a4670b9944
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saving work for the day
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2020-07-07 18:31:14 +01:00 |
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a7f21cfb14
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adding clean files for rerrun 35k dataset
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2020-07-07 18:28:55 +01:00 |
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943513a338
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added script to combine all files in one
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2020-07-07 16:06:11 +01:00 |
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5addb85851
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renamed files that combine dfs
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2020-07-07 15:46:13 +01:00 |
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a220288c5f
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testing combining df script
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2020-07-03 19:23:23 +01:00 |
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262bd79204
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stil fiddling iwth combining dfs
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2020-07-03 19:22:46 +01:00 |
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90cbb49560
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added fixme: for some necessary required changes
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2020-07-02 14:16:40 +01:00 |
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f758c01159
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added combining funct & combining_mcsm_foldx script
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2020-07-01 16:41:58 +01:00 |
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4d686e2933
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refactor foldx pipeline to include:
* command-line args
* creating necessary dirs automagically
* code cleanup, syntax errors, etc etc
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2020-06-30 17:14:30 +01:00 |
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af65a86ff9
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updated code and made it tidy
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2020-06-25 14:40:44 +01:00 |
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3c6122a296
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tidying script
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2020-06-25 13:12:09 +01:00 |
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b82cc11dbe
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updated ref dict to create separate dicts
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2020-06-24 14:10:39 +01:00 |
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626ed3a57b
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added commonly used mutation format for missense muts in the gene_specific nssnp_info file
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2020-06-24 13:34:35 +01:00 |
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a298071309
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combined and output all ors
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2020-06-23 17:34:54 +01:00 |
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003b22ce3f
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script for calcuating various OR & output csv
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2020-06-23 13:07:29 +01:00 |
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a1cc7ee33d
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further tidy for OR calcs
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2020-06-23 12:19:26 +01:00 |
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1e43ca8136
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tody scracth script for various OR calcs
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2020-06-23 11:57:51 +01:00 |
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18998092f4
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all OR calcs using sapply and output as df
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2020-06-22 18:17:06 +01:00 |
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8f272bdc17
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extracting other params from logistic
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2020-06-22 14:11:16 +01:00 |
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ada205962b
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script to combine ors and afs
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2020-06-22 13:07:26 +01:00 |
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0c3c6fd143
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script to combine all ors
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2020-06-19 14:43:23 +01:00 |
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3497d1ef54
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renamed files & added or kinship link file
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2020-06-19 10:33:26 +01:00 |
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fa2bcb5f05
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updated Af and OR calcs script with argeparse and minor tidyup
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2020-06-18 18:37:55 +01:00 |
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76ecb65a1a
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getopt and commandArgs examples, and AF/OR update to use getopt()
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2020-06-18 17:59:28 +01:00 |
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6c2c7e0a90
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removed merging df for AF_OR
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2020-06-18 16:10:02 +01:00 |
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