|
|
e5aca5e24f
|
fixed the duplicate colum problem by removing them from combining_dfs.py
|
2021-11-24 07:57:20 +00:00 |
|
|
|
436bdafece
|
added info re having run mcsm_na for RNAP
|
2021-11-19 07:51:13 +00:00 |
|
|
|
2925c89d11
|
ran mcsm_na for rpob's RNAP complex i.e 5UHC
|
2021-11-19 07:48:42 +00:00 |
|
|
|
cee10cc540
|
ran mcsm format for embb
|
2021-11-13 09:43:56 +00:00 |
|
|
|
4eaa0b5d2b
|
saving work after running combining_dfs.py
|
2021-11-12 14:16:48 +00:00 |
|
|
|
dad8f526a2
|
added TESTING_plots.R
|
2021-11-09 13:55:21 +00:00 |
|
|
|
a5c7e1e9dd
|
added FIXME and TODO related to alr in combinig_dfs.py
|
2021-11-09 13:23:50 +00:00 |
|
|
|
ddae107314
|
saving work in LSHTM_analysis before combining data for targets
|
2021-11-09 12:44:11 +00:00 |
|
|
|
8035308cdf
|
cherry-pick mcsm_na/run_format_results_mcsm_na.py from master to ensure consistency
|
2021-10-28 12:54:04 +01:00 |
|
|
|
45208f4c3d
|
saving ppi2 format script on embb_dev branch
|
2021-10-28 12:22:46 +01:00 |
|
|
|
3368e949e8
|
bring in embb stuff which was in the wrong branch
|
2021-10-28 11:18:13 +01:00 |
|
|
|
0e44958585
|
added log10 OR and P values to myaf_or_calcs.R
|
2021-08-23 20:01:01 +01:00 |
|
|
|
182465d579
|
added corr plots as function for interactive graphs on shiny
|
2021-08-20 18:52:47 +01:00 |
|
|
|
f7aac58081
|
adde format_results_dynamut2.py and ran shiny scripts for barplots
|
2021-08-19 16:25:38 +01:00 |
|
|
|
8cdf720702
|
added pdb_fasta_plot.R for generating some useful plots for shiny
|
2021-08-17 10:55:06 +01:00 |
|
|
|
8de22e14f3
|
extracting gid seq from pdb file using pdbtools
|
2021-08-17 10:53:26 +01:00 |
|
|
|
2511162a1d
|
added aa_index/ with script that return dfs for plots for shiny perhaps
|
2021-08-13 16:22:11 +01:00 |
|
|
|
5529fbf63d
|
added dynamut results formatting scripts, althouh needs to be rerun once b7 completes
|
2021-08-13 13:24:22 +01:00 |
|
|
|
64669eb05f
|
indicated f for format for mcms_na formatting script
|
2021-08-13 13:23:42 +01:00 |
|
|
|
5232731bc5
|
saving work
|
2021-08-12 17:37:56 +01:00 |
|
|
|
8fbf5bcadd
|
extracted results for dynamut gid bissection b10_21
|
2021-08-12 17:35:12 +01:00 |
|
|
|
efe5e0e391
|
Merge branch 'master' into gidb_dev
|
2021-08-12 15:35:28 +01:00 |
|
|
|
fed8cd83a0
|
minor tidy up for script submit_dynamut
|
2021-08-12 15:33:57 +01:00 |
|
|
|
93fae9e5f5
|
reran b7 since previous run file output was 0 bytes
|
2021-08-12 15:29:36 +01:00 |
|
|
|
ca07351086
|
ran b9 and b10 for gid after Dynamut team reran due to server issues
|
2021-08-12 10:06:43 +01:00 |
|
|
|
cf0db2a9c0
|
saving dynamut and mcsm_na jobs submitted and retrieved
|
2021-08-11 17:32:15 +01:00 |
|
|
|
93482df47a
|
added script for formatting mcsm_na results
|
2021-08-06 19:12:57 +01:00 |
|
|
|
50cf6ca3ac
|
ran submit and get_results for one last batch for mcsm_na and did some bash formatting to get proper filenames, etc.
|
2021-08-06 19:09:29 +01:00 |
|
|
|
4733ec9db0
|
resuming work after conference
|
2021-08-05 16:54:34 +01:00 |
|
|
|
a9119d7f03
|
indicated which cols are not available for pnca as I ran these scripts for generating plots for the poster
|
2021-07-07 13:12:29 +01:00 |
|
|
|
55adc3fa60
|
added leg_title size for bp function
|
2021-07-07 13:11:13 +01:00 |
|
|
|
59a1213f65
|
generated pncA plot for poster for ps_combined
|
2021-07-07 11:38:07 +01:00 |
|
|
|
cb3a0f71da
|
reran plots with current lig dist
|
2021-06-30 17:35:57 +01:00 |
|
|
|
ed2fc016ca
|
added the almost done shiny for barplots subcolours
|
2021-06-30 17:20:04 +01:00 |
|
|
|
374764b136
|
renamed barplot_colour_function.R to bp_subcolours.R and reflected it in scripts using it.
|
2021-06-29 14:05:48 +01:00 |
|
|
|
db66fdb844
|
added barplots_subcolours.R that generates heatmap style barplots
|
2021-06-29 14:00:10 +01:00 |
|
|
|
c9a5e7de6b
|
moved subcols script to redundant
|
2021-06-29 13:59:38 +01:00 |
|
|
|
ac09cfc4e0
|
moved barplot_colour_function.R to functions
|
2021-06-29 13:58:22 +01:00 |
|
|
|
3d4ccc51d7
|
updated running_plotting_scripts.txt with corr_plots.R
|
2021-06-28 17:30:25 +01:00 |
|
|
|
237e293ca3
|
moved corr_data and corr_PS_LIG.R to redundant
|
2021-06-28 17:29:31 +01:00 |
|
|
|
55b5d31c07
|
added corr_plots.R to generate corr plots by adding source data in get_plotting_dfs.R and tested with cmd
|
2021-06-28 17:27:50 +01:00 |
|
|
|
a7d26412e5
|
added corr data to get_plotting_dfs.R and generate corr plots
|
2021-06-28 17:25:45 +01:00 |
|
|
|
2993ab722a
|
moved old logo plots scripts to redundant and updated running_plotting_scripts.txt to reflect these and how to run the single logo_plots.R to generate logo plots
|
2021-06-24 17:45:40 +01:00 |
|
|
|
8de2686401
|
added logo_plots.R that now produces all logo plots while sourcing the get_plotting_df.R script
|
2021-06-24 17:34:53 +01:00 |
|
|
|
0e15c05d8b
|
checked logo_multiple_muts.R with the new sourcing script for data
|
2021-06-24 16:43:23 +01:00 |
|
|
|
6bbc3328b9
|
added get_plotting_dfs.R as a mother script to be sourced by all plotting scripts
|
2021-06-24 14:21:34 +01:00 |
|
|
|
9668452e98
|
made logo_plot.R source script that pull in all the data
|
2021-06-24 14:19:46 +01:00 |
|
|
|
c8be8407e8
|
moved my_pairs_panel.R to functions/
|
2021-06-24 12:13:15 +01:00 |
|
|
|
ca2315523d
|
fixed cmd running script problem for logo plots
|
2021-06-24 12:12:36 +01:00 |
|
|
|
552c5e77aa
|
added first line to all func to run from
|
2021-06-24 10:02:14 +01:00 |
|
