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c32005c99c
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adding other split types on ml_iterator
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2022-07-27 15:58:15 +01:00 |
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63c8876764
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checking the splitTTS script to make sure other splits have been factored in
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2022-07-27 15:52:20 +01:00 |
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f4cab1fdfb
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fixed masking condition for ML training data for genes and wrote revised mask files out
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2022-07-27 13:36:16 +01:00 |
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0adf69f75a
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added model names sklearn
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2022-07-16 15:35:42 +01:00 |
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39e72b2dfb
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added all_estimators
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2022-07-16 13:32:19 +01:00 |
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a590354f15
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saving work from panino
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2022-07-12 10:14:06 +01:00 |
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33e3b5a0a6
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various bugs
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2022-07-12 10:14:06 +01:00 |
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6950c4b057
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added reverse traininig as split type in SplitTTS.py
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2022-07-11 20:03:06 +01:00 |
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1965517681
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added other split_type options i.e none and none with bts
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2022-07-11 19:27:14 +01:00 |
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ce730fbe57
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uncommented
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2022-07-10 13:29:01 +01:00 |
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350be30f19
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minor changes to run combined_model
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2022-07-10 13:23:13 +01:00 |
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057c98c2f1
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updated rs
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2022-07-10 13:04:51 +01:00 |
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e37442efd2
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updated ml_iterator function args
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2022-07-10 13:03:14 +01:00 |
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9594d0a328
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uncommented models for logo
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2022-07-10 12:53:51 +01:00 |
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4d5b848471
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iterator
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2022-07-10 12:47:22 +01:00 |
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01ff9d5be6
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added instructions to run individual genes
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2022-07-10 12:45:45 +01:00 |
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3b4cfecc9f
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added target_count_numbers.py
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2022-07-10 12:43:00 +01:00 |
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de5c1270be
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added Mult_clfs_logo and Mult_clsf.py with consistency
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2022-07-10 12:32:52 +01:00 |
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06f2ce97b6
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minor var name fix for MultClfs.py and ml_iterator
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2022-07-09 11:02:37 +01:00 |
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ef52fd7a94
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saving before running
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2022-07-09 10:59:26 +01:00 |
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e07fa3bc05
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rerunning ml_iteraror.py
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2022-07-09 10:58:14 +01:00 |
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8bde6f0640
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minor var bame update in ml_iterator
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2022-07-09 10:52:50 +01:00 |
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8079dd7b6c
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reran to generate merged_df3 with correct dst for dst muts. modified combining_dfs_plotting.R
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2022-07-08 21:33:57 +01:00 |
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289c8913d0
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added MultClds_SIMPLE.py to simplify my function to run without blind test
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2022-07-08 13:54:49 +01:00 |
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880ef46099
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added CHECK_model
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2022-07-08 13:53:44 +01:00 |
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23799275a0
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saving work from thinkpad
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2022-07-08 13:53:17 +01:00 |
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5577f5b195
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fucking shit count vars
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2022-07-07 20:27:03 +01:00 |
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3e18193a36
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added examples
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2022-07-07 17:46:06 +01:00 |
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f57f25f47a
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various changes to count_vars_ML.R
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2022-07-07 12:33:20 +01:00 |
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d14c3f9c4a
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adde dummy classifier
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2022-07-07 12:28:58 +01:00 |
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a15d801c2a
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tried pca
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2022-07-05 23:05:37 +01:00 |
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8d831f3613
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added different scaling options
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2022-07-05 22:47:13 +01:00 |
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ebef0c7967
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added test script to see one gene
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2022-07-05 16:06:24 +01:00 |
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79cb89a019
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saving work
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2022-07-05 16:06:03 +01:00 |
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652cf4802e
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added MultClfs_fi to add FI scores for models, in development
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2022-07-05 14:19:35 +01:00 |
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53c229f480
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added random state to split in function
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2022-07-05 14:15:43 +01:00 |
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e5f882841e
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added cm_datai.py to get data for cm model for running fs later
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2022-07-02 16:57:41 +01:00 |
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b2d0b827ad
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added cm run for logo_skf for actual data
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2022-07-02 16:57:11 +01:00 |
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9071a87056
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fs: cut down the number of iterations
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2022-07-02 11:12:39 +01:00 |
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7ba838b493
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redo unconfusion
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2022-07-02 10:32:19 +01:00 |
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a166a37c0e
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undo wrong rename
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2022-07-02 10:31:55 +01:00 |
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5a81511163
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filename
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2022-07-02 10:28:10 +01:00 |
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dccd3c8eb2
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multiple changes
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2022-07-02 10:25:55 +01:00 |
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2fda32901b
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change more hardcoded CPU counts to os.cpu_count()
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2022-07-02 10:25:13 +01:00 |
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b8653c6afe
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ML scripts: {'n_jobs': os.cpu_count() }
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2022-07-02 10:22:07 +01:00 |
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11af00f1db
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changed ml output dirs and ready to run fs
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2022-07-01 21:40:14 +01:00 |
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57348f1874
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added log frile for cm run for complete data with skf
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2022-07-01 20:38:34 +01:00 |
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b7e1b51a31
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added ml_iterator_fs.py
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2022-07-01 20:38:08 +01:00 |
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b5777a17c9
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saving work
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2022-07-01 20:37:41 +01:00 |
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d812835713
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added cm_logo_skf.py and placeholder for splits
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2022-07-01 13:55:12 +01:00 |
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