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b28d0afded
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various debug, doc, and args
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2020-05-25 14:27:25 +01:00 |
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3a0ff9b35e
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added scratch/
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2020-05-22 12:03:11 +01:00 |
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73762568e8
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building script for inspecting pdb
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2020-05-22 11:57:59 +01:00 |
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bdad2dcfda
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fixing hetatm script
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2020-05-21 12:54:10 +01:00 |
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bc368be4b7
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added script for pairwise alignment
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2020-05-15 17:58:14 +01:00 |
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cf3e507475
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tidy up code
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2020-05-15 13:48:50 +01:00 |
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f28b287c86
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script for saving pdb chains in single file
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2020-05-15 13:44:57 +01:00 |
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bc2844dffb
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renamed extract chain file
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2020-05-15 10:59:19 +01:00 |
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ea213d09aa
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added pdb_chain splitter code and wrapper
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2020-05-13 16:54:20 +01:00 |
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6b527baaff
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added pdbtools from github source and modified seq.py to exclude hetatm seq extraction
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2020-05-12 14:08:08 +01:00 |
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5ac87e76c7
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adding commands for use of pdbtools
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2020-05-12 12:50:49 +01:00 |
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1d84846789
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handle not ready (refresh) url
Please enter the commit message for your changes. Lines starting
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2020-04-21 17:12:18 +01:00 |
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8b1a7fc71c
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moved scripts to /ind_scripts & added add col to formatting script
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2020-04-20 12:52:10 +01:00 |
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368496733a
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fixed indentation error and ran mcsm_wrapper dcs
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2020-04-17 12:19:08 +01:00 |
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bc03aab82d
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add wrapper and mcsm library
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2020-04-16 17:45:24 +01:00 |
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23c2ddf45f
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defined method for formatting mcsm_results
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2020-04-14 11:30:36 +01:00 |
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8b7ccccc49
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saving work for the day
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2020-04-11 19:00:39 +01:00 |
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fb7588cedf
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added lambda func to normalise duet and aff values
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2020-04-11 18:52:57 +01:00 |
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9eb7747065
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added script to format results
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2020-04-10 19:32:47 +01:00 |
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95147b577c
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saving work for today
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2020-04-09 16:40:45 +01:00 |
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e4df1c5095
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adding separae script for getting results for mcsm
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2020-04-09 15:42:56 +01:00 |
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41f118223c
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refactoring bash into python to run mcsm
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2020-04-08 18:27:51 +01:00 |
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f42b6f725f
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minor tweaks
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2020-04-08 18:27:09 +01:00 |
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e1e0313fe8
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combine df script with command line args and added method
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2020-04-08 12:44:17 +01:00 |
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6f545413bc
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correcting indendation
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2020-04-08 12:43:37 +01:00 |
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2ca5aea897
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refactoring: added command line args to combine_dfs
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2020-04-08 11:44:53 +01:00 |
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60ac125d2b
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saving work for today
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2020-04-07 17:57:34 +01:00 |
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bead9a48bd
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adapted rd_df script to make it take command line args and define function
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2020-04-07 17:42:59 +01:00 |
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73ae22e8a2
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tidy kd_df script
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2020-04-07 17:42:06 +01:00 |
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ae541ca16a
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adapted kd calc script with command line args and made it into a function
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2020-04-07 16:45:59 +01:00 |
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ded7307c22
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kd script with command line args and as function
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2020-04-07 16:39:50 +01:00 |
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129808d4a5
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updating kd script to take command line args
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2020-04-07 16:13:54 +01:00 |
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bf0568345e
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renamed file for consistency
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2020-04-07 16:04:01 +01:00 |
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91068f5bd1
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modified dssp_df to handle multiple chains
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2020-04-07 16:02:19 +01:00 |
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3a1431d8ed
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added dssp.py that runs, processes and outputs csv
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2020-04-07 15:08:18 +01:00 |
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08da425e7e
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adding settings params
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2020-04-06 19:04:35 +01:00 |
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3905a81c38
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refactoring code to make it take command line args
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2020-04-06 19:03:41 +01:00 |
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0191ee3493
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logoplot from df and seqs with custom height
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2020-03-29 17:11:17 +01:00 |
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4f50786c6f
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added R header file to base dir to allow general access by R scripts
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2020-03-28 17:56:39 +00:00 |
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745dd343fd
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tidied combining plot scripts
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2020-03-28 17:54:45 +00:00 |
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4569e704c1
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added mutate.py script for msa generation
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2020-03-27 17:11:16 +00:00 |
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c2a4e1b0ec
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saving work for the day
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2020-03-27 17:08:33 +00:00 |
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aad225b3d4
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changed filename to the new combined output (mcsm+struct params)
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2020-03-27 12:43:48 +00:00 |
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e598f7d5dd
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combining mcsm and struct params
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2020-03-27 12:39:02 +00:00 |
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0eaff73114
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tidy code and saving work for the day
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2020-03-26 17:58:39 +00:00 |
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f0becbe386
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added script to combined dfs of structural params like kd, dssp & rd
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2020-03-26 17:14:20 +00:00 |
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51a9d814c2
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changed outcols in dssp and kd outputs
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2020-03-26 17:12:59 +00:00 |
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dd2e2d03eb
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added residue depth processing to generate df
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2020-03-26 15:44:20 +00:00 |
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a074d29f6e
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tidy code and renamed kd.py to kd_df.py
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2020-03-26 15:43:13 +00:00 |
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73e0029b65
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tidied and updated kd and dssp scripts & generated their respective outputs
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2020-03-25 18:19:23 +00:00 |
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