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ad0b814f9c
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moved old af_or_calcs.R to redundant
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2021-06-11 13:27:40 +01:00 |
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587be435e9
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saving the correct af or script
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2021-06-11 13:26:28 +01:00 |
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4e38e2a80e
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saving work before converting to a function
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2021-06-11 13:25:02 +01:00 |
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d9e00b9a42
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minor tweak to plotting_globals.R to make gene_match a global var
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2021-06-11 11:21:20 +01:00 |
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29fa99b914
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moved functions/ in the scripts dir
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2021-06-11 11:11:39 +01:00 |
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2dc81e72f4
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moved old bp scripts to redundant
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2021-06-10 16:18:08 +01:00 |
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ff7522eca2
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moved plotting_func to functions and replaced 3 basic_barplots scripts with 1
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2021-06-10 16:09:58 +01:00 |
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b9d176afa4
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added function for position_count_bp.R
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2021-06-10 14:46:11 +01:00 |
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cbb3749a21
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added functions dir for further tidying and tested this with ind scripts for stability
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2021-06-09 18:13:18 +01:00 |
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912a439589
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moved bp function script to function/
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2021-06-09 17:08:56 +01:00 |
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826b8aa9d0
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added shiny app and turned stability bp to function
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2021-06-09 17:05:02 +01:00 |
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f871dd39cd
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saving work
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2021-06-09 16:27:05 +01:00 |
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47a6ddbf72
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repuposed and ran basic_barplots for lig and foldx including filenames
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2021-06-09 11:33:08 +01:00 |
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27d79105ef
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repurposed basic_barplots_foldx.R
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2021-06-09 11:24:50 +01:00 |
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8f73c7b804
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uddated how to run plotting scripts. This is a cleaner version to keep up-to-date
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2021-06-08 16:53:07 +01:00 |
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3f691281bc
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wrapper script basic_barplots_PS.R now takes cmd and calls functions to generate plots.Tested and verfiied.
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2021-06-08 16:48:19 +01:00 |
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1505a3c707
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tidied plotting_data.R as a function returning a lits of dfs
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2021-06-08 16:00:28 +01:00 |
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9af0249e0e
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added plotting_globals and text file with info on how to run plotting scripst
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2021-06-04 17:26:01 +01:00 |
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a5715bcccc
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tweaking baic bp to make generic
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2021-06-04 17:23:41 +01:00 |
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aaa24ca32d
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minor updates to dir.R
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2021-06-04 15:05:52 +01:00 |
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a1fef205da
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adpated combining_dfs.py and plotting.R for gid and attempting to make it generic
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2021-06-04 14:36:16 +01:00 |
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2c5c704d0b
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test branch commit
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2021-06-04 09:43:48 +01:00 |
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b77f55fcc2
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saving before starting work
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2021-06-04 09:38:17 +01:00 |
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59430a49dd
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updated counts.py with wt seq counts
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2021-03-03 11:54:48 +00:00 |
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88229860e2
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added adjusted p-values for DM muts comparison
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2021-02-27 10:42:04 +00:00 |
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9784bc1729
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updated count.py with indel and stop codon count
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2021-02-24 09:56:36 +00:00 |
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8975a4cedf
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retrieved results for gid b8 and b9
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2021-02-23 08:59:01 +00:00 |
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3ec42edc57
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retrieved gid b7 and submitted b8,b9 and b10
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2021-02-22 09:31:29 +00:00 |
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7925a408cd
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retrieved results for gid b6
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2021-02-21 16:23:22 +00:00 |
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aca73048c1
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added count.py to count samples for quick checks
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2021-02-21 16:07:33 +00:00 |
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9b0d2f6550
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saving work and generating revised_figure7
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2021-02-20 16:17:38 +00:00 |
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e8644d7af5
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dynamut retrieved b5 and b6, submitted 6 and 7
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2021-02-20 13:05:30 +00:00 |
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d27b5898f7
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code to retrieve results from batch 4 and 5 once ready
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2021-02-19 12:09:26 +00:00 |
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b12a7769ca
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updated .gitignore
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2021-02-18 12:01:04 +00:00 |
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0c563274b4
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updated .gitignore to include temp dirs
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2021-02-18 11:54:36 +00:00 |
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8e68fb8f6a
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add files
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2021-02-18 11:50:46 +00:00 |
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ce5b545703
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running dynamut in batches
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2021-02-18 11:27:20 +00:00 |
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ff2bc78645
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renamed files in dynamut for consistency
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2021-02-18 10:52:51 +00:00 |
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84fccfbbb6
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renamed file in mcsm_na to be consistent
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2021-02-18 10:51:17 +00:00 |
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501492f9fb
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renaming file
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2021-02-18 10:48:06 +00:00 |
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96e101cf15
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renamed file run_submit to run_submit_dynamut
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2021-02-18 10:45:35 +00:00 |
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06df7369de
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renamed file run_results to run_get_results
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2021-02-18 10:43:45 +00:00 |
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4d3389264d
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ran mcsm_na for all 26 batches for gid
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2021-02-16 13:55:31 +00:00 |
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c02a55c167
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sunmitting mcsm_na jobs manually
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2021-02-16 10:51:06 +00:00 |
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3925c4fd29
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added get_results_mcsm_na.py run_get_results.py to retrieve results for each batch run of 20 for mcsm_na
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2021-02-15 12:22:52 +00:00 |
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4df1c54674
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saving work for mcsm_na
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2021-02-15 12:22:19 +00:00 |
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0d58c4800b
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added mcsm_na_temp
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2021-02-12 17:40:02 +00:00 |
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84970a667c
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added shell script to format muts for mcsm NA
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2021-02-12 17:38:42 +00:00 |
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a6f1f65acf
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added mcsm_na scripts to submit batches of 20
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2021-02-12 16:51:41 +00:00 |
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7c84e8b044
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minor cody tidy up
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2021-02-12 16:50:34 +00:00 |
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