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96277d78f6
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saving dynamut and mcsm_na jobs submitted and retrieved
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2021-08-11 17:32:15 +01:00 |
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7c0824d0f2
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added script for formatting mcsm_na results
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2021-08-06 19:12:57 +01:00 |
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656639e871
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ran submit and get_results for one last batch for mcsm_na and did some bash formatting to get proper filenames, etc.
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2021-08-06 19:09:29 +01:00 |
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718f92d7ff
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resuming work after conference
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2021-08-05 16:54:34 +01:00 |
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6759649c61
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indicated which cols are not available for pnca as I ran these scripts for generating plots for the poster
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2021-07-07 13:12:29 +01:00 |
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5eb07cdf86
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added leg_title size for bp function
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2021-07-07 13:11:13 +01:00 |
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4bf4650c88
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generated pncA plot for poster for ps_combined
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2021-07-07 11:38:07 +01:00 |
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a6f0832a42
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reran plots with current lig dist
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2021-06-30 17:35:57 +01:00 |
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b679068a5e
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added the almost done shiny for barplots subcolours
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2021-06-30 17:20:04 +01:00 |
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c599d28377
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renamed barplot_colour_function.R to bp_subcolours.R and reflected it in scripts using it.
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2021-06-29 14:05:48 +01:00 |
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9f5b983bc0
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added barplots_subcolours.R that generates heatmap style barplots
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2021-06-29 14:00:10 +01:00 |
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89e6b03673
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moved subcols script to redundant
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2021-06-29 13:59:38 +01:00 |
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a9f9cec494
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moved barplot_colour_function.R to functions
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2021-06-29 13:58:22 +01:00 |
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29d9717abe
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updated running_plotting_scripts.txt with corr_plots.R
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2021-06-28 17:30:25 +01:00 |
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20976c31bb
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moved corr_data and corr_PS_LIG.R to redundant
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2021-06-28 17:29:31 +01:00 |
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0f983d2889
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added corr_plots.R to generate corr plots by adding source data in get_plotting_dfs.R and tested with cmd
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2021-06-28 17:27:50 +01:00 |
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b614962e45
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added corr data to get_plotting_dfs.R and generate corr plots
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2021-06-28 17:25:45 +01:00 |
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639ccf1cd7
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moved old logo plots scripts to redundant and updated running_plotting_scripts.txt to reflect these and how to run the single logo_plots.R to generate logo plots
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2021-06-24 17:45:40 +01:00 |
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f1a8fb583a
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added logo_plots.R that now produces all logo plots while sourcing the get_plotting_df.R script
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2021-06-24 17:34:53 +01:00 |
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e75cfd2665
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checked logo_multiple_muts.R with the new sourcing script for data
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2021-06-24 16:43:23 +01:00 |
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71d874e350
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added get_plotting_dfs.R as a mother script to be sourced by all plotting scripts
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2021-06-24 14:21:34 +01:00 |
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5eba273a55
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made logo_plot.R source script that pull in all the data
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2021-06-24 14:19:46 +01:00 |
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506e639a7b
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moved my_pairs_panel.R to functions/
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2021-06-24 12:13:15 +01:00 |
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762b1a3931
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fixed cmd running script problem for logo plots
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2021-06-24 12:12:36 +01:00 |
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e822f9f690
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added first line to all func to run from
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2021-06-24 10:02:14 +01:00 |
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1c27bbff11
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saving work on logo plots before finishing
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2021-06-23 16:49:18 +01:00 |
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8f4daba98d
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generated logo_plot.R from cmd, checked
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2021-06-23 16:35:44 +01:00 |
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7e6affea84
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added test_plotting_data.R, and replaced input param of csv into df
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2021-06-23 16:16:23 +01:00 |
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2aec79af31
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changes made to combining_dfs_plotting.R
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2021-06-23 16:15:15 +01:00 |
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c6d1260f74
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updated logo_plot.R with functions
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2021-06-23 12:06:41 +01:00 |
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13c61e7813
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moved combining_dfs_plotting.R to function and added test script for this as well
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2021-06-22 18:15:15 +01:00 |
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ac383165ec
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added files that were moved to redundant
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2021-06-22 18:06:08 +01:00 |
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04a7cf15dc
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turned combining_dfs_plotting.R to a function and moved old script to redundant
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2021-06-22 18:04:10 +01:00 |
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e10ab6a7c6
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updating script to sort out proper merging for plotting
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2021-06-22 14:46:03 +01:00 |
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064182d784
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took extra lines from data extraction
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2021-06-21 16:15:44 +01:00 |
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920007cc83
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added af_or to add to combining_dfs.py
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2021-06-21 14:53:04 +01:00 |
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8a301e8bb1
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added deep ddg formatted data to combinig_dfs.py
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2021-06-21 12:56:06 +01:00 |
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9534fc57d4
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added deepddg data to combining_df.py
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2021-06-21 11:53:56 +01:00 |
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f79aea254e
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added function to add aa code for mcsm and gwas style mutations to a given files
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2021-06-18 17:48:26 +01:00 |
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f6a2e029cb
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saving work before adding files
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2021-06-18 17:47:09 +01:00 |
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86ed1805fc
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Merge branch 'gidb_dev'
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2021-06-14 13:27:00 +01:00 |
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ddb1a7a7aa
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added aa_prop.py and add_aa_prop.py to add aa properties for wt and mutant in a given file containing one letter code wt and mut cols as csv
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2021-06-14 13:24:00 +01:00 |
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57e4d8cd1e
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changed aa_prop_water to 3 categ according to KD, updated ref dict
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2021-06-14 13:22:56 +01:00 |
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81ab3fe5ba
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added function and test for aa_prop_bp.R
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2021-06-14 09:22:05 +01:00 |
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ca1a0e10ca
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added example for layout
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2021-06-14 09:06:30 +01:00 |
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687adf0ec7
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weird pdbtools commit
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2021-06-11 21:45:18 +01:00 |
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8fa9faa17d
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added another aa dict type to reference_dict.py and calculated electrostatisc changes for muts based on adding these properties to mcsm mut stule snps. This will allow the calculation on a given file type since the ref dict can now easily be adapted.
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2021-06-11 17:12:21 +01:00 |
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f88e2665e9
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calculating af_or using function and cmd options now
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2021-06-11 15:12:08 +01:00 |
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7686aa39b4
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added script to test af_or_calcs
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2021-06-11 13:33:25 +01:00 |
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931f8ec2f9
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added mychisq_or.R and af_or_calcs.R
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2021-06-11 13:28:07 +01:00 |
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