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95147b577c
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saving work for today
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2020-04-09 16:40:45 +01:00 |
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e4df1c5095
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adding separae script for getting results for mcsm
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2020-04-09 15:42:56 +01:00 |
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41f118223c
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refactoring bash into python to run mcsm
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2020-04-08 18:27:51 +01:00 |
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f42b6f725f
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minor tweaks
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2020-04-08 18:27:09 +01:00 |
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e1e0313fe8
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combine df script with command line args and added method
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2020-04-08 12:44:17 +01:00 |
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6f545413bc
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correcting indendation
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2020-04-08 12:43:37 +01:00 |
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2ca5aea897
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refactoring: added command line args to combine_dfs
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2020-04-08 11:44:53 +01:00 |
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60ac125d2b
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saving work for today
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2020-04-07 17:57:34 +01:00 |
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bead9a48bd
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adapted rd_df script to make it take command line args and define function
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2020-04-07 17:42:59 +01:00 |
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73ae22e8a2
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tidy kd_df script
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2020-04-07 17:42:06 +01:00 |
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ae541ca16a
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adapted kd calc script with command line args and made it into a function
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2020-04-07 16:45:59 +01:00 |
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ded7307c22
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kd script with command line args and as function
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2020-04-07 16:39:50 +01:00 |
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129808d4a5
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updating kd script to take command line args
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2020-04-07 16:13:54 +01:00 |
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bf0568345e
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renamed file for consistency
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2020-04-07 16:04:01 +01:00 |
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91068f5bd1
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modified dssp_df to handle multiple chains
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2020-04-07 16:02:19 +01:00 |
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3a1431d8ed
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added dssp.py that runs, processes and outputs csv
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2020-04-07 15:08:18 +01:00 |
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08da425e7e
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adding settings params
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2020-04-06 19:04:35 +01:00 |
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3905a81c38
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refactoring code to make it take command line args
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2020-04-06 19:03:41 +01:00 |
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0191ee3493
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logoplot from df and seqs with custom height
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2020-03-29 17:11:17 +01:00 |
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4f50786c6f
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added R header file to base dir to allow general access by R scripts
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2020-03-28 17:56:39 +00:00 |
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745dd343fd
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tidied combining plot scripts
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2020-03-28 17:54:45 +00:00 |
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4569e704c1
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added mutate.py script for msa generation
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2020-03-27 17:11:16 +00:00 |
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c2a4e1b0ec
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saving work for the day
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2020-03-27 17:08:33 +00:00 |
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aad225b3d4
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changed filename to the new combined output (mcsm+struct params)
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2020-03-27 12:43:48 +00:00 |
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e598f7d5dd
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combining mcsm and struct params
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2020-03-27 12:39:02 +00:00 |
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0eaff73114
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tidy code and saving work for the day
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2020-03-26 17:58:39 +00:00 |
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f0becbe386
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added script to combined dfs of structural params like kd, dssp & rd
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2020-03-26 17:14:20 +00:00 |
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51a9d814c2
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changed outcols in dssp and kd outputs
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2020-03-26 17:12:59 +00:00 |
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dd2e2d03eb
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added residue depth processing to generate df
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2020-03-26 15:44:20 +00:00 |
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a074d29f6e
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tidy code and renamed kd.py to kd_df.py
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2020-03-26 15:43:13 +00:00 |
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73e0029b65
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tidied and updated kd and dssp scripts & generated their respective outputs
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2020-03-25 18:19:23 +00:00 |
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37e1d43b76
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updated kd.py to relfect a merging col for combining num params later
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2020-03-25 15:20:54 +00:00 |
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d44ab57f5a
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output from comb script & electrostatic mut changes calculated
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2020-03-25 13:42:18 +00:00 |
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954eb88c45
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updated combining df scripts for duet & lig
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2020-03-24 18:28:52 +00:00 |
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d81be80305
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minor changes to variable names in .R & .py
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2020-03-24 10:36:51 +00:00 |
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0001c727e0
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renamed files to make more generic
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2020-03-23 18:13:02 +00:00 |
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d29b81a686
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renamed files to make more generic
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2020-03-23 17:48:39 +00:00 |
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8c7efcb276
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fixed bugs and tidy code
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2020-03-23 17:43:06 +00:00 |
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5adef195e0
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delete old file
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2020-03-23 17:40:19 +00:00 |
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f686563c98
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updated pnca_extraction and AF_OR calcs
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2020-03-23 17:36:42 +00:00 |
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53d19d5dd8
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bug fixes and massive clean up of data extraction script
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2020-03-23 13:33:25 +00:00 |
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a5356cf88b
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saving from work
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2020-02-27 15:16:20 +00:00 |
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61f8dc57c9
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renamed file and updated logo plot code
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2020-02-26 12:00:32 +00:00 |
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95f0e28fb2
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added 2 logo plot scripts
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2020-02-25 19:09:43 +00:00 |
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7b393a2b13
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updating mut_seq script
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2020-02-25 18:13:18 +00:00 |
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2805fdda40
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hydrophobicity script
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2020-02-25 10:42:58 +00:00 |
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2ed0df41e2
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remove old surface_res3.py
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2020-02-20 12:23:56 +00:00 |
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26e4652d63
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fixup
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2020-02-20 10:41:49 +00:00 |
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ec25e9fd2d
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adding scripts for struct params
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2020-02-16 15:14:36 +00:00 |
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31dd74d5ac
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remove __pycache__, update .gitignore
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2020-02-16 15:08:45 +00:00 |
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