842efe4409
created prominent effect calcualtions
2022-08-10 20:02:43 +01:00
3af11ec3d3
wideP_consurf3
2022-08-10 14:08:43 +01:00
0bcbb44ae5
addded old script to redundant
2022-08-10 14:08:23 +01:00
2f7558a883
aadded colnames to plot as names
2022-08-10 14:08:23 +01:00
4315adc556
wideP_consurf3
2022-08-10 14:07:11 +01:00
285b28b1d6
various plots
2022-08-10 11:06:13 +01:00
a6d93b3fa8
starting corr plots
2022-08-09 21:55:24 +01:00
d78b072732
comment out run
2022-08-09 20:00:42 +01:00
af03fc6fd6
various
2022-08-09 19:56:17 +01:00
415d05ab6e
various stuff
2022-08-09 19:42:29 +01:00
5cbaef3d36
various heat-bar/position tile faff
2022-08-09 19:42:29 +01:00
94454d6fba
added combined lineage plot
2022-08-09 19:34:07 +01:00
79d83b6240
various changes
2022-08-09 13:46:05 +01:00
4ce2087224
various changes
2022-08-08 16:48:53 +01:00
5bdfd03443
refactored dm om plots and generated the final layout
2022-08-08 16:46:27 +01:00
28510471f0
consurf tile fixes
2022-08-08 15:37:28 +01:00
0234a8f77b
more plot modifications dm and om plots mainly
2022-08-08 15:32:16 +01:00
4e6f10d1ba
added outcome col to dm_om data
2022-08-07 11:21:25 +01:00
c968089cd2
refactoring logo plots to add flame bar
2022-08-06 18:48:12 +01:00
f194b5ea4f
added corr plot TODO for lineage counts
2022-08-06 13:30:41 +01:00
569e372476
agenerated corr plots with MAF and provean
2022-08-06 13:08:42 +01:00
1a513913ce
reflected the factor thing as been added as new additon
2022-08-05 20:00:04 +01:00
ae8bc8ae85
added as.factor in unpired stats
2022-08-05 19:58:31 +01:00
9c955cddc0
still playing
2022-08-05 18:49:26 +01:00
92fba43dc1
mods
2022-08-05 18:32:23 +01:00
57433607bc
lf_bp2: add a "monochrome" option
2022-08-05 18:28:10 +01:00
d5bc1c272e
lf_bp2
2022-08-05 18:13:44 +01:00
33925dafe9
things
2022-08-05 16:13:57 +01:00
cc27ffe82f
added the rev script that i used to develop the trimmed version
2022-08-05 14:36:58 +01:00
05ab89ec09
git trimmed downthe dm_om_data.R
2022-08-05 14:36:02 +01:00
fae846395d
fix
2022-08-05 12:52:51 +01:00
31148dfbdc
lf_bp fuckage
2022-08-05 12:46:28 +01:00
c0f59bc9c9
breakage
2022-08-05 12:45:16 +01:00
95131abc3c
consurf fixes
2022-08-04 16:48:53 +01:00
bf41d01b39
multiple script updates and bug fixes
2022-08-04 16:48:31 +01:00
599cd7493f
buggy bugs that bug me
2022-08-04 15:18:23 +01:00
e1b8e103ea
saving from my panino, made lineage dist plots
2022-08-04 13:47:24 +01:00
1efb534f0f
fix some derps
2022-08-04 13:46:52 +01:00
61c7a30835
minor tidy and leble adjust sizes for simple barplots
2022-08-04 10:26:18 +01:00
aabe466599
added plots for thesis
2022-08-03 21:32:55 +01:00
41c4996426
more of the previous thing
2022-08-03 20:51:32 +01:00
bdbc97c40a
fix many plot functions to stop them using the "g=ggplot()" pattern,
...
which annoyingly throws away lots of useful data that RShiny needs for
clickable plots. Also split the "flame bar" for ligand distance out into
separate functions in generate_distance_colour_map.R. This can now be
easily incorporated into any "wide" graph showing all positions.
2022-08-03 18:58:27 +01:00
e498d46f8b
consurf plot: add debug option. logoP SNP: distance flame tiles
2022-08-03 18:58:27 +01:00
8079dd7b6c
reran to generate merged_df3 with correct dst for dst muts. modified combining_dfs_plotting.R
2022-07-08 21:33:57 +01:00
478df927cc
horrible lineage analysis hell
2022-06-28 21:51:02 +01:00
1baf7fa9f0
lf
2022-05-25 23:44:13 +01:00
39566ceadd
lineage labels gsub now redundant in combining_dfs_plotting.R
2022-05-05 19:31:00 +01:00
4f22cd3db1
various tweaks to make the RShiny dashboards work
2022-04-28 20:21:03 +01:00
ac78fe16cd
logoP SNP adj
2022-03-06 14:48:53 +00:00
56a6aa8c7e
lineage_dist: add all_lineages feature
2022-03-06 13:31:43 +00:00
