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8079dd7b6c
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reran to generate merged_df3 with correct dst for dst muts. modified combining_dfs_plotting.R
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2022-07-08 21:33:57 +01:00 |
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289c8913d0
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added MultClds_SIMPLE.py to simplify my function to run without blind test
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2022-07-08 13:54:49 +01:00 |
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880ef46099
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added CHECK_model
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2022-07-08 13:53:44 +01:00 |
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23799275a0
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saving work from thinkpad
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2022-07-08 13:53:17 +01:00 |
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5577f5b195
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fucking shit count vars
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2022-07-07 20:27:03 +01:00 |
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3e18193a36
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added examples
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2022-07-07 17:46:06 +01:00 |
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f57f25f47a
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various changes to count_vars_ML.R
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2022-07-07 12:33:20 +01:00 |
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d14c3f9c4a
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adde dummy classifier
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2022-07-07 12:28:58 +01:00 |
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a15d801c2a
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tried pca
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2022-07-05 23:05:37 +01:00 |
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8d831f3613
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added different scaling options
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2022-07-05 22:47:13 +01:00 |
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ebef0c7967
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added test script to see one gene
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2022-07-05 16:06:24 +01:00 |
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79cb89a019
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saving work
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2022-07-05 16:06:03 +01:00 |
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652cf4802e
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added MultClfs_fi to add FI scores for models, in development
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2022-07-05 14:19:35 +01:00 |
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53c229f480
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added random state to split in function
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2022-07-05 14:15:43 +01:00 |
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e5f882841e
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added cm_datai.py to get data for cm model for running fs later
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2022-07-02 16:57:41 +01:00 |
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b2d0b827ad
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added cm run for logo_skf for actual data
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2022-07-02 16:57:11 +01:00 |
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9071a87056
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fs: cut down the number of iterations
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2022-07-02 11:12:39 +01:00 |
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7ba838b493
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redo unconfusion
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2022-07-02 10:32:19 +01:00 |
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a166a37c0e
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undo wrong rename
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2022-07-02 10:31:55 +01:00 |
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5a81511163
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filename
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2022-07-02 10:28:10 +01:00 |
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dccd3c8eb2
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multiple changes
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2022-07-02 10:25:55 +01:00 |
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2fda32901b
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change more hardcoded CPU counts to os.cpu_count()
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2022-07-02 10:25:13 +01:00 |
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b8653c6afe
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ML scripts: {'n_jobs': os.cpu_count() }
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2022-07-02 10:22:07 +01:00 |
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11af00f1db
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changed ml output dirs and ready to run fs
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2022-07-01 21:40:14 +01:00 |
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57348f1874
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added log frile for cm run for complete data with skf
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2022-07-01 20:38:34 +01:00 |
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b7e1b51a31
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added ml_iterator_fs.py
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2022-07-01 20:38:08 +01:00 |
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b5777a17c9
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saving work
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2022-07-01 20:37:41 +01:00 |
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d812835713
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added cm_logo_skf.py and placeholder for splits
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2022-07-01 13:55:12 +01:00 |
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952cfeb4c0
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added MultClf for combined model to make changes with cv
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2022-07-01 11:40:23 +01:00 |
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0494765c9b
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fixed indentation
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2022-07-01 11:38:59 +01:00 |
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7eef463915
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TEMP -> ml_iterator
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2022-06-29 22:20:23 +01:00 |
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50cb36f2b3
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add iterating iterator of iterators (TEMP)
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2022-06-29 22:12:31 +01:00 |
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cbfa9ff31b
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lineage plots: be a function and then run over all pairs
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2022-06-29 19:24:47 +01:00 |
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8965bee5d6
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LINEAGE2 plots: p value stars
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2022-06-29 17:18:55 +01:00 |
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087170a798
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added .py
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2022-06-29 12:08:35 +01:00 |
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9aadb0329f
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added ml_functions dir
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2022-06-29 12:06:47 +01:00 |
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c85c965c3e
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added TODO for lineage2.R
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2022-06-29 10:26:08 +01:00 |
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aff7247e3b
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really!?!?!?!?
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2022-06-28 21:52:04 +01:00 |
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478df927cc
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horrible lineage analysis hell
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2022-06-28 21:51:02 +01:00 |
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ce0f12382e
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added a comment to data extraction
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2022-06-28 13:45:59 +01:00 |
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6c10776ea9
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saving work
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2022-06-25 14:15:21 +01:00 |
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f99b5d1888
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added GetMLData.py for combined model and added to functions including previous ones that have been moved there
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2022-06-25 14:12:07 +01:00 |
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5d38cde912
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added all run scripts for diffferent splits
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2022-06-24 20:39:50 +01:00 |
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e2bc384155
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added FS to MultClfs.py and modified data for different splits for consistency
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2022-06-24 20:35:53 +01:00 |
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edb7aebd6a
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saving
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2022-06-24 15:43:00 +01:00 |
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1160ad7268
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added running_scripts to keep track
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2022-06-24 15:41:27 +01:00 |
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b37a950fec
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optimised run_7030.py to generate ouput from dict now that the processfunction and parameter dicts have been added
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2022-06-24 15:40:18 +01:00 |
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7dc7e25016
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appened sys.path to allow local imports
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2022-06-24 13:41:07 +01:00 |
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a15ab80bc6
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added log_FS_pnca_7030.txt after running FS for pnca
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2022-06-24 13:27:16 +01:00 |
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96f4e7085a
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added test_MultClfs.py to test the functions now in a single script
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2022-06-24 13:26:42 +01:00 |
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