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6e8116bc16
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calculating af_or using function and cmd options now
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2021-06-11 15:12:08 +01:00 |
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d9e00b9a42
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minor tweak to plotting_globals.R to make gene_match a global var
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2021-06-11 11:21:20 +01:00 |
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29fa99b914
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moved functions/ in the scripts dir
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2021-06-11 11:11:39 +01:00 |
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2dc81e72f4
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moved old bp scripts to redundant
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2021-06-10 16:18:08 +01:00 |
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ff7522eca2
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moved plotting_func to functions and replaced 3 basic_barplots scripts with 1
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2021-06-10 16:09:58 +01:00 |
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b9d176afa4
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added function for position_count_bp.R
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2021-06-10 14:46:11 +01:00 |
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cbb3749a21
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added functions dir for further tidying and tested this with ind scripts for stability
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2021-06-09 18:13:18 +01:00 |
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912a439589
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moved bp function script to function/
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2021-06-09 17:08:56 +01:00 |
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826b8aa9d0
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added shiny app and turned stability bp to function
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2021-06-09 17:05:02 +01:00 |
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f871dd39cd
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saving work
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2021-06-09 16:27:05 +01:00 |
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47a6ddbf72
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repuposed and ran basic_barplots for lig and foldx including filenames
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2021-06-09 11:33:08 +01:00 |
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27d79105ef
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repurposed basic_barplots_foldx.R
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2021-06-09 11:24:50 +01:00 |
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8f73c7b804
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uddated how to run plotting scripts. This is a cleaner version to keep up-to-date
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2021-06-08 16:53:07 +01:00 |
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3f691281bc
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wrapper script basic_barplots_PS.R now takes cmd and calls functions to generate plots.Tested and verfiied.
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2021-06-08 16:48:19 +01:00 |
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1505a3c707
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tidied plotting_data.R as a function returning a lits of dfs
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2021-06-08 16:00:28 +01:00 |
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9af0249e0e
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added plotting_globals and text file with info on how to run plotting scripst
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2021-06-04 17:26:01 +01:00 |
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a5715bcccc
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tweaking baic bp to make generic
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2021-06-04 17:23:41 +01:00 |
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aaa24ca32d
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minor updates to dir.R
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2021-06-04 15:05:52 +01:00 |
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a1fef205da
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adpated combining_dfs.py and plotting.R for gid and attempting to make it generic
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2021-06-04 14:36:16 +01:00 |
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59430a49dd
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updated counts.py with wt seq counts
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2021-03-03 11:54:48 +00:00 |
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9784bc1729
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updated count.py with indel and stop codon count
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2021-02-24 09:56:36 +00:00 |
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9b0d2f6550
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saving work and generating revised_figure7
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2021-02-20 16:17:38 +00:00 |
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719f18a226
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added base histogram script for af and or
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2020-10-13 13:38:17 +01:00 |
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784199d48f
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added ns prefix to SNPs for unambiguity
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2020-10-13 13:37:22 +01:00 |
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02fae30c29
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changing labels in graphs for frontiers journal
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2020-10-09 13:10:08 +01:00 |
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e91d704929
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renamed other_plots.R to other_plots_combined.R and changing labels to capital letters for journal
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2020-10-09 12:17:24 +01:00 |
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bf3e830f64
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saving work minor changes perhaps
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2020-10-08 16:03:12 +01:00 |
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4157b8137c
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added barplot_subcolours_aa_combined.R to combine and label these plots
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2020-10-06 18:43:20 +01:00 |
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861b2a7ee1
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adjusted x axis position label for barplot_subcols_aa_LIG.R
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2020-10-06 18:42:24 +01:00 |
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4368c061c7
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generated labelled ps_plots_combined.R and capital "P" for position in barplots coloured aa for Lig
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2020-10-06 18:15:50 +01:00 |
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315f7b1e0e
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output corr plots with coloured dots
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2020-10-06 17:47:24 +01:00 |
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0cdc507ba5
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updated TASK in hist_af_or_combined.R
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2020-10-06 16:43:59 +01:00 |
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711781933c
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renamed dist_plots.R to dist_plots_check.R as its exploratory
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2020-10-06 16:39:24 +01:00 |
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cc8443c7d4
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added hist_af_or_combined.R to generate plots for output and moved previosu run to scratch_plots/
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2020-10-06 16:33:25 +01:00 |
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9b9ee07801
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added hist_af.R
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2020-10-06 15:07:42 +01:00 |
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3ecba79eb9
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added basic_barplots_foldx.R for supp figure
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2020-10-06 09:53:34 +01:00 |
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b63bbd6f15
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moved not required plots to scratch
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2020-10-06 09:52:54 +01:00 |
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6354caae3c
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added corr_data.R corr_PS_LIG_all.R corr_PS_LIG_v2.R
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2020-09-29 16:08:25 +01:00 |
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9ba7b32c14
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added dist_plot.R to generate plots for writing results
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2020-09-23 19:24:42 +01:00 |
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a0755eeab6
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added more analysis in extreme_muts.R to be tidied later
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2020-09-23 19:23:34 +01:00 |
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5f10ad8075
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added fold and duet agreement to extreme_muts.R
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2020-09-23 11:20:22 +01:00 |
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4398c049ca
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added foldx scaled and foldx outcome to plotting_data.R
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2020-09-23 11:12:41 +01:00 |
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5deb12187e
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updated extreme_muts.R with number of budding hotspots and mult muts numbers
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2020-09-23 11:02:13 +01:00 |
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535a5e86c0
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saving combined bubble plot with labels
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2020-09-18 18:19:55 +01:00 |
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07fa82520e
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added script basic_barplots_combined.R to combine basic barplots for PS and lig
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2020-09-18 18:09:24 +01:00 |
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0c5ef2e72c
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saving work
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2020-09-18 18:07:48 +01:00 |
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c5266770af
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added ggcorr all plot figure for supp
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2020-09-18 12:46:12 +01:00 |
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c0b8d56fea
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added ggcorr plots combined for all params
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2020-09-18 11:56:19 +01:00 |
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9ae9042033
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saving work
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2020-09-18 11:55:08 +01:00 |
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dcf3d474e7
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updated Header file and saving work
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2020-09-17 20:12:08 +01:00 |
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