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4f22cd3db1
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various tweaks to make the RShiny dashboards work
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2022-04-28 20:21:03 +01:00 |
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ac78fe16cd
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logoP SNP adj
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2022-03-06 14:48:53 +00:00 |
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56a6aa8c7e
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lineage_dist: add all_lineages feature
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2022-03-06 13:31:43 +00:00 |
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8fa585417e
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tweaks for params
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2022-03-02 19:42:24 +00:00 |
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bf3194259e
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lineage: toggle for "all lineages"
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2022-03-02 15:54:09 +00:00 |
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6c6709e41e
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various changes
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2022-03-02 11:44:04 +00:00 |
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2274f01f23
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combined msa and wt seq into 1 list so only list is passed as an arg for plotting ED plots
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2022-02-15 08:31:58 +00:00 |
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d38521e03a
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added placeholder defaults for functions in R to make sure that R shiny layput works with a data set for meeting tomorrow
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2022-02-14 19:33:00 +00:00 |
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0460ca1708
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added consurf plot function and corresponding test script
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2022-02-14 11:16:30 +00:00 |
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18e1f14455
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saving changes
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2022-02-14 11:14:40 +00:00 |
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d13484e8f5
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added function lineage_plot_data.R and corresponding test script, also renamed corr_plot_df.R to corr_plot_data and corresponing test script
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2022-02-01 16:25:58 +00:00 |
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3d45780c1a
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updated docs for dm_om_data.R
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2022-02-01 16:23:03 +00:00 |
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e795c00831
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added gene conditions to test_dm_om_data.R
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2022-02-01 10:54:10 +00:00 |
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5779b3fe87
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added function to get wf and lf data and corresponding test
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2022-01-31 17:36:34 +00:00 |
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a287b801f7
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saving before commiting
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2022-01-31 17:36:00 +00:00 |
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ea931b59f3
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relaced ligand_distance with the variable
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2022-01-30 09:47:56 +00:00 |
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8df4a85798
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deleted accidental blank line
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2022-01-29 18:10:38 +00:00 |
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6b7b5e6c98
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saving work
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2022-01-29 18:08:07 +00:00 |
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1035547309
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added function to extract data for correlation plots and corresponding test script
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2022-01-29 17:31:02 +00:00 |
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7317156bba
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updated docs for the logo functions and tested all of them again
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2022-01-26 15:53:53 +00:00 |
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2f7f40efb1
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added a few tweaks to check logoplots
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2022-01-26 15:22:13 +00:00 |
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1b20f09075
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tested edplot with alr gene
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2022-01-26 13:35:57 +00:00 |
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8750e3126a
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renamed logoP.R --> logoP_or.R
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2022-01-26 12:37:08 +00:00 |
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a2da95ef7c
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added ed_pfm_data.R function and its corresponding test
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2022-01-26 11:55:38 +00:00 |
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586927ca56
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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b133b8be24
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save content
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2022-01-26 11:34:59 +00:00 |
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1c1e98ad4f
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added get_logo_heights() in my_logolas.R
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2022-01-26 11:16:02 +00:00 |
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92af9fd565
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combined logolas and raw data msa plots into 1 script and called it the same as before logoP_msa.R
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2022-01-26 11:06:04 +00:00 |
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6365fff858
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moved logoP_msa_raw to redundant
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2022-01-26 11:04:21 +00:00 |
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3bc5dcbad3
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renamed logoP_msa.R --> logoP_msa_raw.R
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2022-01-26 11:03:45 +00:00 |
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6a9f4a0cab
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added logoP_logolas.R to plot logolas like plot to show ED regions
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2022-01-24 17:23:32 +00:00 |
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9aa62b33b1
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added my_logolas.R
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2022-01-24 13:46:50 +00:00 |
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febb8f0f7f
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checked embb logo msa plot with chosen positions
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2022-01-19 19:04:43 +00:00 |
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b72ffb5d2c
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just tested logo plot msa with embb after correcting the OMINOUS fasta file
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2022-01-19 18:57:04 +00:00 |
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59eaf58747
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now definitely checked for all targets
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2022-01-18 17:43:21 +00:00 |
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b9d173a2c4
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checked combining_dfs.R for all targets
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2022-01-18 17:42:04 +00:00 |
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e2cdee2d08
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added additional check in combining_df_plotting.R to account for check when generating merged_df2 as muts NOT present in mcsm can create trouble, so fixed that and ran it successfully for alr and katg
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2022-01-18 17:36:54 +00:00 |
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8f8a9db92c
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tried ED logo, but needs work
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2022-01-18 16:53:16 +00:00 |
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00094f036a
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playing with MSA plots to allow filtering of positions, arghhh
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2022-01-18 15:30:41 +00:00 |
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4e779b2945
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saving work
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2022-01-18 11:14:25 +00:00 |
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c8c4afb28a
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added logoP_msa.R
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2022-01-17 19:11:48 +00:00 |
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68a092037b
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finding seq discrepancy in MSA for embb
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2022-01-17 19:11:10 +00:00 |
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07aedfe286
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added both test logo plots in one script
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2022-01-16 15:00:54 +00:00 |
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efe6703673
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attempted omitting snp from logo plot for OR
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2022-01-16 14:45:39 +00:00 |
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1244581cdd
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just added some minor tweaks for the logo plots with OR
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2022-01-16 13:31:32 +00:00 |
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9546355241
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updated and tested logoP_snp.R. All done nicely
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2022-01-15 13:17:26 +00:00 |
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0334188801
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adde tests scripts for logoP and logoP_snp.R
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2022-01-14 16:10:49 +00:00 |
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f640087922
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added logoP_snp.R and renamed logo_plots_func.R to logoP.R
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2022-01-14 16:09:57 +00:00 |
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f27b536157
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added option to remove empty positions from logo plot
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2022-01-14 11:07:16 +00:00 |
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4e2f5f35db
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added log option to function properly
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2022-01-14 10:50:56 +00:00 |
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