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3b7cea3c47
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adding legend forlogo plot
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2022-01-14 10:18:01 +00:00 |
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426a5cb0b5
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added logo_plot function and test to check it
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2022-01-13 18:55:13 +00:00 |
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344a74a9e1
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saving work for logo plots
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2022-01-13 18:53:47 +00:00 |
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7cbd9b4996
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added barebone notes for logo_plots_func.R
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2022-01-12 17:59:02 +00:00 |
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3f7bc908ec
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going through functions and script for interactive plots
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2022-01-12 17:58:16 +00:00 |
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1f266c4cb8
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more tidying and formatting for combining_dfs.py. Hopefully no more after today
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2022-01-11 17:51:28 +00:00 |
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c48fa1dbb0
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minor tidy up to check interactive graphs Rshiny
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2022-01-07 16:07:44 +00:00 |
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7d60a09297
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tidy up
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2022-01-06 16:38:59 +00:00 |
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bffa3c376c
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thorough checking and updates for final running of all gene targets
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2022-01-05 17:55:35 +00:00 |
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b66cf31219
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added untracked files in scripts/plotting
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2022-01-04 12:27:25 +00:00 |
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3ab6a3dbc1
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added untracked files in scripts and dynamut
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2022-01-04 12:26:54 +00:00 |
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00b84ccb1c
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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46e2c93885
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merged changes from the combining_dfs.py file from branch 'embb_dev'
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2021-11-24 07:58:27 +00:00 |
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e5aca5e24f
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fixed the duplicate colum problem by removing them from combining_dfs.py
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2021-11-24 07:57:20 +00:00 |
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4f52627740
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Merge branch 'embb_dev'
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2021-11-19 08:05:46 +00:00 |
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436bdafece
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added info re having run mcsm_na for RNAP
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2021-11-19 07:51:13 +00:00 |
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2925c89d11
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ran mcsm_na for rpob's RNAP complex i.e 5UHC
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2021-11-19 07:48:42 +00:00 |
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cee10cc540
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ran mcsm format for embb
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2021-11-13 09:43:56 +00:00 |
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c32de1bf0f
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Merge branch 'embb_dev'
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2021-11-12 14:37:10 +00:00 |
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4eaa0b5d2b
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saving work after running combining_dfs.py
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2021-11-12 14:16:48 +00:00 |
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dad8f526a2
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added TESTING_plots.R
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2021-11-09 13:55:21 +00:00 |
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a5c7e1e9dd
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added FIXME and TODO related to alr in combinig_dfs.py
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2021-11-09 13:23:50 +00:00 |
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ddae107314
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saving work in LSHTM_analysis before combining data for targets
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2021-11-09 12:44:11 +00:00 |
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63ec8a1c37
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added split_csv_chain.sh for mCSM-NA analysis in scripts/
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2021-10-29 14:00:25 +01:00 |
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8035308cdf
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cherry-pick mcsm_na/run_format_results_mcsm_na.py from master to ensure consistency
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2021-10-28 12:54:04 +01:00 |
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e2bc1cdde1
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Merge branch 'gidb_dev' (including merge conflict while after adding CLI arguments for mcsm_na/format_results_mcsm_na.py)
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2021-10-28 12:45:39 +01:00 |
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9cfb32afb8
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pretending that we added the CLI arguments
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2021-10-28 12:43:44 +01:00 |
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45208f4c3d
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saving ppi2 format script on embb_dev branch
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2021-10-28 12:22:46 +01:00 |
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e4661963ab
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saving work after embb branch merge
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2021-10-28 12:15:29 +01:00 |
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3368e949e8
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bring in embb stuff which was in the wrong branch
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2021-10-28 11:18:13 +01:00 |
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057291a561
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much development
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2021-10-28 10:41:43 +01:00 |
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873fd3a121
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added gene.lower to dynamut2 format result script
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2021-10-19 11:12:34 +01:00 |
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ba21188bd2
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added notes
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2021-10-18 13:58:06 +01:00 |
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675b222181
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added cmd option for dynamut2 formatting results
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2021-10-18 13:52:29 +01:00 |
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98325d763f
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fixed output filename in deepddg_format.py
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2021-09-30 13:37:17 +01:00 |
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af227f9864
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moved deepddg_format.py from ind output dir to scripts
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2021-09-30 13:35:33 +01:00 |
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93a91518e1
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fix runFoldx so that it looks for a missing rotabase.txt in the process_dir and also print the foldx command that will be run
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2021-09-29 18:24:06 +01:00 |
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d443ecea6b
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added separate script for splitting csv after adding chain ID. saves lots of post processing
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2021-09-20 16:13:15 +01:00 |
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daa3556ede
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split csv for isoniazid
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2021-09-20 16:12:45 +01:00 |
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5cd6c300a7
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saving minor update to function fix
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2021-09-17 13:35:48 +01:00 |
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e115c3636c
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fixed lf_bp function with aes_string and reformulate
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2021-09-17 13:33:19 +01:00 |
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e2d7a6567e
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minor bug fixes to allow i_graps for stability to render correctly
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2021-09-16 18:59:02 +01:00 |
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51aa321792
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sorting out bp_subcolours in interaction
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2021-09-16 12:44:42 +01:00 |
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e8734b1c4b
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sorted merged_df2 and consequently others by position in combining_dfs_plotting.R
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2021-09-16 12:43:36 +01:00 |
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cb5d7aa5ab
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corrected foldx_outcome classification in combining_dfs.py as positive are Destabilising and neg as Stabilising
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2021-09-16 10:59:55 +01:00 |
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56600ac3f8
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added config/ with drug gene names
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2021-09-16 10:05:28 +01:00 |
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746889b075
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saving work for the day after massive repurpose
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2021-09-15 19:48:56 +01:00 |
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1d16c6848e
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moved coloured_bp_data.R to redundant in light of updated function and reflected this in notes withing get_plotting_dfs.R
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2021-09-15 19:42:08 +01:00 |
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96e6e8db5d
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saving work and tidying script
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2021-09-15 19:37:39 +01:00 |
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f0e66b2f7b
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added the scratch script as _v2 to play while repurposing bp_subcolours.R
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2021-09-15 19:34:24 +01:00 |
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