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3318f3f85a
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Update README.md
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2020-09-21 18:11:24 +01:00 |
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e0561f29c0
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Update README.md
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2020-09-21 18:11:10 +01:00 |
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7c6581f19a
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Update README.md
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2020-09-21 18:09:55 +01:00 |
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e8aff6129a
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Update README.md
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2020-09-21 18:08:49 +01:00 |
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7243f0c7e7
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Update README.md
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2020-09-21 18:07:58 +01:00 |
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759efd876d
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updated gitignore for more tidying
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2020-09-21 17:58:51 +01:00 |
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2c013124ad
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updated gitignore to tidyup
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2020-09-21 17:54:54 +01:00 |
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1cf1f4e70e
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remove unneeded dir
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2020-09-21 17:49:19 +01:00 |
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759054de35
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added ks_test_all_PS.R, ks_test_dr_PS.R, ks_test_dr_others_PS.R
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2020-09-21 17:46:22 +01:00 |
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535a5e86c0
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saving combined bubble plot with labels
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2020-09-18 18:19:55 +01:00 |
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ad447b62df
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updated .gitignore to include .RData
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2020-09-18 18:10:23 +01:00 |
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07fa82520e
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added script basic_barplots_combined.R to combine basic barplots for PS and lig
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2020-09-18 18:09:24 +01:00 |
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0c5ef2e72c
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saving work
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2020-09-18 18:07:48 +01:00 |
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c5266770af
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added ggcorr all plot figure for supp
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2020-09-18 12:46:12 +01:00 |
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c0b8d56fea
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added ggcorr plots combined for all params
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2020-09-18 11:56:19 +01:00 |
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9ae9042033
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saving work
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2020-09-18 11:55:08 +01:00 |
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dcf3d474e7
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updated Header file and saving work
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2020-09-17 20:12:08 +01:00 |
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6e991e928a
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logo_combined.R, outputs logo plot with multiple mutations and log_or
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2020-09-17 20:01:57 +01:00 |
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91f8707d47
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minor tweaks in logo and corr plots
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2020-09-17 20:00:34 +01:00 |
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bf5854aeaa
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updated corr plots to show points with no colours
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2020-09-17 17:17:11 +01:00 |
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36040d90f2
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updated corr_PS_LIG.R to output both styles of corr plots
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2020-09-17 17:04:03 +01:00 |
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3999aa26a3
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renamed corr_plot scripts
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2020-09-17 16:38:40 +01:00 |
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faf52e1790
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updated plot name in corr_plots_foldx.R
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2020-09-17 16:36:45 +01:00 |
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afe650fd7f
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renamed file to denote corr adjusted and plain
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2020-09-17 16:35:35 +01:00 |
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c09330130e
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added scratch_plots/ggpairs_test.R to play with ggally for future
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2020-09-17 15:32:40 +01:00 |
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a6182f2b3d
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added plotting/corr_plots_style2.Radded my version of pairs.panel with lower panel turned off. Also added new script for corr plots using my version of pairs.panel
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2020-09-17 15:31:37 +01:00 |
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e8b58bfe28
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saving work
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2020-09-17 15:29:17 +01:00 |
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b41b33b73c
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added new layput for dm_om and facet_lineage plot
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2020-09-17 14:01:04 +01:00 |
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32da321f32
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updated with two outputs: labelled and unlabelled
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2020-09-16 15:37:56 +01:00 |
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c4e96ce7d9
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renaming and moving files
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2020-09-16 14:57:51 +01:00 |
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3269a27dd2
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renamed file in scratch plot/
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2020-09-16 14:53:53 +01:00 |
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19287f3b4b
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playing with lineage_dist_dm_om
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2020-09-16 13:23:49 +01:00 |
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1bc7f83916
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added dir scratch_plots/ to practice extra plots
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2020-09-16 11:51:17 +01:00 |
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ae11792f46
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updated plotting_data.R with stability colours as variables
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2020-09-16 11:47:38 +01:00 |
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4d34f5b5d7
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saving work
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2020-09-15 13:34:26 +01:00 |
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aa4294dff2
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updated distribution scripts to try adding points
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2020-09-15 13:33:28 +01:00 |
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3bb2d3c78c
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updating lineage_country.R with different data slices
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2020-09-15 13:14:33 +01:00 |
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65b5a3c049
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added ggridges_lineage_country.R for dist by country
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2020-09-15 12:50:25 +01:00 |
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4f943bb1a3
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updated gitignore to include TO_DO/
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2020-09-14 17:26:28 +01:00 |
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f72e81664d
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added mutate.py and run_mutate.sh to create MSA aligbments for mutant sequences required to generate logoplot from sequence in R
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2020-09-14 15:17:49 +01:00 |
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da9075458f
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saving logoplot attempts
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2020-09-14 15:13:52 +01:00 |
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ff1e1cdaf1
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added corr_plots_foldx.R
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2020-09-11 20:28:18 +01:00 |
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767418eb18
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updated figure for multi mut plot
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2020-09-11 19:30:20 +01:00 |
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e2a8171113
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added logo_multiple_muts.R
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2020-09-11 18:12:06 +01:00 |
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4e2bf1496a
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added check for active site mut count
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2020-09-11 17:41:40 +01:00 |
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0665bc80a9
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saving extreme muts analysis
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2020-09-11 16:43:27 +01:00 |
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a14fc4dc33
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added extreme_muts.R
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2020-09-11 16:07:23 +01:00 |
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8648320de7
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added delta symbol to plotting_data.R and pretty labels for dr_other_muts figure
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2020-09-11 14:40:37 +01:00 |
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f6a440dc55
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added plotting/other_plots_data.R
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2020-09-11 12:52:17 +01:00 |
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b0c4791206
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results for electrostatic changes
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2020-09-11 10:27:56 +01:00 |
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