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246cd636a1
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saving work in LSHTM_analysis before combining data for targets
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2021-11-09 12:44:11 +00:00 |
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80f73a3697
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cherry-pick mcsm_na/run_format_results_mcsm_na.py from master to ensure consistency
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2021-10-28 12:54:04 +01:00 |
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7d6087c82e
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saving ppi2 format script on embb_dev branch
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2021-10-28 12:22:46 +01:00 |
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9c37dbee31
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bring in embb stuff which was in the wrong branch
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2021-10-28 11:18:13 +01:00 |
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1e3670f935
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added log10 OR and P values to myaf_or_calcs.R
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2021-08-23 20:01:01 +01:00 |
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0c16937b68
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added corr plots as function for interactive graphs on shiny
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2021-08-20 18:52:47 +01:00 |
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c0c30fd527
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adde format_results_dynamut2.py and ran shiny scripts for barplots
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2021-08-19 16:25:38 +01:00 |
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9cb33ed67b
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added pdb_fasta_plot.R for generating some useful plots for shiny
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2021-08-17 10:55:06 +01:00 |
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067fc85163
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extracting gid seq from pdb file using pdbtools
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2021-08-17 10:53:26 +01:00 |
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9b1d1d009d
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added aa_index/ with script that return dfs for plots for shiny perhaps
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2021-08-13 16:22:11 +01:00 |
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1ea42097ae
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added dynamut results formatting scripts, althouh needs to be rerun once b7 completes
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2021-08-13 13:24:22 +01:00 |
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2e9d142184
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indicated f for format for mcms_na formatting script
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2021-08-13 13:23:42 +01:00 |
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2eee69ee80
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saving work
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2021-08-12 17:37:56 +01:00 |
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938dba7fcc
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extracted results for dynamut gid bissection b10_21
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2021-08-12 17:35:12 +01:00 |
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59a370b45a
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Merge branch 'master' into gidb_dev
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2021-08-12 15:35:28 +01:00 |
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3086972480
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minor tidy up for script submit_dynamut
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2021-08-12 15:33:57 +01:00 |
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a641347f63
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reran b7 since previous run file output was 0 bytes
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2021-08-12 15:29:36 +01:00 |
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e48f215227
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ran b9 and b10 for gid after Dynamut team reran due to server issues
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2021-08-12 10:06:43 +01:00 |
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96277d78f6
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saving dynamut and mcsm_na jobs submitted and retrieved
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2021-08-11 17:32:15 +01:00 |
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7c0824d0f2
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added script for formatting mcsm_na results
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2021-08-06 19:12:57 +01:00 |
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656639e871
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ran submit and get_results for one last batch for mcsm_na and did some bash formatting to get proper filenames, etc.
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2021-08-06 19:09:29 +01:00 |
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718f92d7ff
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resuming work after conference
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2021-08-05 16:54:34 +01:00 |
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6759649c61
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indicated which cols are not available for pnca as I ran these scripts for generating plots for the poster
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2021-07-07 13:12:29 +01:00 |
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5eb07cdf86
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added leg_title size for bp function
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2021-07-07 13:11:13 +01:00 |
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4bf4650c88
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generated pncA plot for poster for ps_combined
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2021-07-07 11:38:07 +01:00 |
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a6f0832a42
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reran plots with current lig dist
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2021-06-30 17:35:57 +01:00 |
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b679068a5e
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added the almost done shiny for barplots subcolours
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2021-06-30 17:20:04 +01:00 |
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c599d28377
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renamed barplot_colour_function.R to bp_subcolours.R and reflected it in scripts using it.
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2021-06-29 14:05:48 +01:00 |
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9f5b983bc0
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added barplots_subcolours.R that generates heatmap style barplots
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2021-06-29 14:00:10 +01:00 |
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89e6b03673
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moved subcols script to redundant
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2021-06-29 13:59:38 +01:00 |
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a9f9cec494
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moved barplot_colour_function.R to functions
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2021-06-29 13:58:22 +01:00 |
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29d9717abe
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updated running_plotting_scripts.txt with corr_plots.R
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2021-06-28 17:30:25 +01:00 |
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20976c31bb
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moved corr_data and corr_PS_LIG.R to redundant
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2021-06-28 17:29:31 +01:00 |
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0f983d2889
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added corr_plots.R to generate corr plots by adding source data in get_plotting_dfs.R and tested with cmd
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2021-06-28 17:27:50 +01:00 |
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b614962e45
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added corr data to get_plotting_dfs.R and generate corr plots
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2021-06-28 17:25:45 +01:00 |
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639ccf1cd7
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moved old logo plots scripts to redundant and updated running_plotting_scripts.txt to reflect these and how to run the single logo_plots.R to generate logo plots
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2021-06-24 17:45:40 +01:00 |
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f1a8fb583a
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added logo_plots.R that now produces all logo plots while sourcing the get_plotting_df.R script
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2021-06-24 17:34:53 +01:00 |
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e75cfd2665
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checked logo_multiple_muts.R with the new sourcing script for data
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2021-06-24 16:43:23 +01:00 |
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71d874e350
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added get_plotting_dfs.R as a mother script to be sourced by all plotting scripts
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2021-06-24 14:21:34 +01:00 |
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5eba273a55
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made logo_plot.R source script that pull in all the data
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2021-06-24 14:19:46 +01:00 |
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506e639a7b
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moved my_pairs_panel.R to functions/
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2021-06-24 12:13:15 +01:00 |
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762b1a3931
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fixed cmd running script problem for logo plots
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2021-06-24 12:12:36 +01:00 |
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e822f9f690
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added first line to all func to run from
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2021-06-24 10:02:14 +01:00 |
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1c27bbff11
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saving work on logo plots before finishing
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2021-06-23 16:49:18 +01:00 |
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8f4daba98d
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generated logo_plot.R from cmd, checked
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2021-06-23 16:35:44 +01:00 |
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7e6affea84
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added test_plotting_data.R, and replaced input param of csv into df
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2021-06-23 16:16:23 +01:00 |
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2aec79af31
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changes made to combining_dfs_plotting.R
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2021-06-23 16:15:15 +01:00 |
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c6d1260f74
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updated logo_plot.R with functions
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2021-06-23 12:06:41 +01:00 |
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13c61e7813
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moved combining_dfs_plotting.R to function and added test script for this as well
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2021-06-22 18:15:15 +01:00 |
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ac383165ec
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added files that were moved to redundant
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2021-06-22 18:06:08 +01:00 |
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