|
|
f355846dae
|
added active site indication for merged_dfs in count_vars_ML.R and also added 'gene_name' in combining_dfs.py
|
2022-06-15 18:36:28 +01:00 |
|
|
|
a2bcc3a732
|
added mmcsm_lig and provean dfs merges in comnining_df.py
|
2022-05-25 08:50:33 +01:00 |
|
|
|
1f266c4cb8
|
more tidying and formatting for combining_dfs.py. Hopefully no more after today
|
2022-01-11 17:51:28 +00:00 |
|
|
|
bffa3c376c
|
thorough checking and updates for final running of all gene targets
|
2022-01-05 17:55:35 +00:00 |
|
|
|
00b84ccb1c
|
handled rpob 5uhc position offset in mcsm_ppi2
|
2022-01-04 10:45:29 +00:00 |
|
|
|
e5aca5e24f
|
fixed the duplicate colum problem by removing them from combining_dfs.py
|
2021-11-24 07:57:20 +00:00 |
|
|
|
2925c89d11
|
ran mcsm_na for rpob's RNAP complex i.e 5UHC
|
2021-11-19 07:48:42 +00:00 |
|
|
|
cee10cc540
|
ran mcsm format for embb
|
2021-11-13 09:43:56 +00:00 |
|
|
|
4eaa0b5d2b
|
saving work after running combining_dfs.py
|
2021-11-12 14:16:48 +00:00 |
|
|
|
a5c7e1e9dd
|
added FIXME and TODO related to alr in combinig_dfs.py
|
2021-11-09 13:23:50 +00:00 |
|
|
|
3368e949e8
|
bring in embb stuff which was in the wrong branch
|
2021-10-28 11:18:13 +01:00 |
|
|
|
0e44958585
|
added log10 OR and P values to myaf_or_calcs.R
|
2021-08-23 20:01:01 +01:00 |
|
|
|
a3c10eb842
|
added af_or to add to combining_dfs.py
|
2021-06-21 14:53:04 +01:00 |
|
|
|
1155959e67
|
added deep ddg formatted data to combinig_dfs.py
|
2021-06-21 12:56:06 +01:00 |
|
|
|
3ff9604002
|
added deepddg data to combining_df.py
|
2021-06-21 11:53:56 +01:00 |
|
|
|
926d181120
|
saving work before adding files
|
2021-06-18 17:47:09 +01:00 |
|
|
|
aaa24ca32d
|
minor updates to dir.R
|
2021-06-04 15:05:52 +01:00 |
|
|
|
a1fef205da
|
adpated combining_dfs.py and plotting.R for gid and attempting to make it generic
|
2021-06-04 14:36:16 +01:00 |
|
|
|
f10f8f6d2a
|
changing category of ambiguous muts
|
2020-09-08 18:51:03 +01:00 |
|
|
|
e980085294
|
outputting revised all params file
|
2020-09-08 17:52:45 +01:00 |
|
|
|
f7ab799f74
|
hopefully finally sorted data merges!
|
2020-09-08 17:46:52 +01:00 |
|
|
|
e4608342a4
|
various changes
|
2020-09-08 17:13:02 +01:00 |
|
|
|
5d0e2d94ce
|
adding missing mutation col in combining_dfs
|
2020-09-04 21:04:18 +01:00 |
|
|
|
c48c5177ca
|
resolving missing mutation info in combining script
|
2020-09-04 20:56:16 +01:00 |
|
|
|
59cb57a795
|
updated script to combine dfs
|
2020-08-21 13:22:28 +01:00 |
|
|
|
acc6a42880
|
saved work before adding plots
|
2020-07-15 13:36:20 +01:00 |
|
|
|
f27c223bdd
|
resolving merge conflicts dur to shoddy data
|
2020-07-14 14:09:42 +01:00 |
|
|
|
8f460347b4
|
adding clean files for rerrun 35k dataset
|
2020-07-07 18:28:55 +01:00 |
|
|
|
0973717287
|
added script to combine all files in one
|
2020-07-07 16:06:11 +01:00 |
|
|
|
01ef04613a
|
renamed files that combine dfs
|
2020-07-07 15:46:13 +01:00 |
|
