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2cbc460f87
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added output tables with active site
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2022-08-26 21:50:33 +01:00 |
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dd69da01f6
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get_plotting_dfs
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2022-08-23 15:35:47 +01:00 |
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ee70845939
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stuff
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2022-08-23 15:21:15 +01:00 |
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04253b961f
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lots of per-plot configs
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2022-08-22 21:56:13 +01:00 |
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13999a477d
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fixed source to contain plotting cols and pos_count correctly
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2022-08-22 14:33:06 +01:00 |
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4147a6b90f
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a massive waste of time
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2022-08-22 13:05:53 +01:00 |
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8d6c148fff
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renamed 2 to _v2
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2022-08-22 11:43:13 +01:00 |
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802d6f8495
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renamed 2 to _v2
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2022-08-22 11:41:42 +01:00 |
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a3e5283a9b
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generated ggpairs plots finally
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2022-08-15 19:05:22 +01:00 |
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cd86fcf8e8
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added separate scripts for layout for convinience
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2022-08-09 21:47:24 +01:00 |
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af03fc6fd6
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various
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2022-08-09 19:56:17 +01:00 |
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5bdfd03443
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refactored dm om plots and generated the final layout
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2022-08-08 16:46:27 +01:00 |
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0234a8f77b
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more plot modifications dm and om plots mainly
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2022-08-08 15:32:16 +01:00 |
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4e6f10d1ba
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added outcome col to dm_om data
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2022-08-07 11:21:25 +01:00 |
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569e372476
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agenerated corr plots with MAF and provean
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2022-08-06 13:08:42 +01:00 |
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33925dafe9
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things
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2022-08-05 16:13:57 +01:00 |
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164113f665
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moved dm_om_data.R the script version to redundant and the function version has been trimmed to for readability
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2022-08-05 14:44:36 +01:00 |
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05ab89ec09
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git trimmed downthe dm_om_data.R
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2022-08-05 14:36:02 +01:00 |
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c0f59bc9c9
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breakage
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2022-08-05 12:45:16 +01:00 |
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599cd7493f
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buggy bugs that bug me
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2022-08-04 15:18:23 +01:00 |
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8079dd7b6c
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reran to generate merged_df3 with correct dst for dst muts. modified combining_dfs_plotting.R
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2022-07-08 21:33:57 +01:00 |
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f355846dae
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added active site indication for merged_dfs in count_vars_ML.R and also added 'gene_name' in combining_dfs.py
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2022-06-15 18:36:28 +01:00 |
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9c3818fd98
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added NOTE to the barplots_subcolours_aa_PS.R as I am trying it for other plots
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2022-02-02 18:59:33 +00:00 |
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3d45780c1a
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updated docs for dm_om_data.R
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2022-02-01 16:23:03 +00:00 |
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e795c00831
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added gene conditions to test_dm_om_data.R
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2022-02-01 10:54:10 +00:00 |
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ef1fb96b88
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tested dm_om_data function with alr gene to make sure valid dfs are being returned
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2022-01-31 17:50:12 +00:00 |
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a287b801f7
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saving before commiting
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2022-01-31 17:36:00 +00:00 |
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a4a4890634
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added FIXME to fix dm_om data for targets other than gid
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2022-01-29 17:30:19 +00:00 |
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5346431256
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repurposing corr_data.R into a function to allow required params to be passed in
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2022-01-29 17:24:15 +00:00 |
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dec6c72fb5
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more header_tt
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2022-01-26 11:50:50 +00:00 |
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00094f036a
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playing with MSA plots to allow filtering of positions, arghhh
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2022-01-18 15:30:41 +00:00 |
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9546355241
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updated and tested logoP_snp.R. All done nicely
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2022-01-15 13:17:26 +00:00 |
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344a74a9e1
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saving work for logo plots
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2022-01-13 18:53:47 +00:00 |
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3f7bc908ec
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going through functions and script for interactive plots
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2022-01-12 17:58:16 +00:00 |
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1f266c4cb8
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more tidying and formatting for combining_dfs.py. Hopefully no more after today
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2022-01-11 17:51:28 +00:00 |
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c48fa1dbb0
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minor tidy up to check interactive graphs Rshiny
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2022-01-07 16:07:44 +00:00 |
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00b84ccb1c
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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746889b075
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saving work for the day after massive repurpose
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2021-09-15 19:48:56 +01:00 |
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1d16c6848e
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moved coloured_bp_data.R to redundant in light of updated function and reflected this in notes withing get_plotting_dfs.R
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2021-09-15 19:42:08 +01:00 |
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7550efbd4c
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added wideplot subcols generation within bp_subcolours.R to make it easier to call the whole thing as a function and use merged_df3 to generate plot without having to separately generate special data for it. Tested with real data on different stability params
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2021-09-15 19:29:09 +01:00 |
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5c8a9e8f00
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sorted combining_dfs.py with all other data files and tidied up get_plotting_dfs.R
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2021-09-10 18:16:41 +01:00 |
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4ba4ff602e
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added foldx_scaled and deepddg_scaled values added to combine_df.py and also used that script to merge all the dfs so that merged_df2 and merged_df3 are infact what we need for downstream processing
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2021-09-10 16:58:36 +01:00 |
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03031d2eb6
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moved all test scripts for functions to tests/
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2021-09-09 13:12:07 +01:00 |
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686fd0cd80
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updated running_plotting_scripts.R
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2021-09-07 11:16:41 +01:00 |
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869fca7f94
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added function for generating lineage barplots and also test script along wiadding script for processing data and added it to get_plotting_dfs.R
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2021-09-06 19:50:50 +01:00 |
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fcb4b85747
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modified bp with option for adding stats and boxplplots. Moved old one to redundant
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2021-09-02 12:50:24 +01:00 |
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6d9412d232
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playing with dm_om (other)plots data and graph on gid branch
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2021-08-26 16:35:46 +01:00 |
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0e44958585
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added log10 OR and P values to myaf_or_calcs.R
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2021-08-23 20:01:01 +01:00 |
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182465d579
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added corr plots as function for interactive graphs on shiny
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2021-08-20 18:52:47 +01:00 |
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4733ec9db0
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resuming work after conference
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2021-08-05 16:54:34 +01:00 |
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