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073381e5a2
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updated results summary in the data_extraction.py
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2020-11-12 17:05:29 +00:00 |
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e67fbfd986
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handling missing dir for data_extraction.py
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2020-11-12 13:21:06 +00:00 |
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c7194b7423
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added what is required as a minimum to run data_extraction
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2020-11-06 19:04:27 +00:00 |
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719f18a226
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added base histogram script for af and or
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2020-10-13 13:38:17 +01:00 |
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784199d48f
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added ns prefix to SNPs for unambiguity
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2020-10-13 13:37:22 +01:00 |
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02fae30c29
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changing labels in graphs for frontiers journal
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2020-10-09 13:10:08 +01:00 |
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e91d704929
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renamed other_plots.R to other_plots_combined.R and changing labels to capital letters for journal
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2020-10-09 12:17:24 +01:00 |
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bf3e830f64
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saving work minor changes perhaps
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2020-10-08 16:03:12 +01:00 |
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7158f5b2c9
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added af and OR columns in the data
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2020-10-06 19:39:59 +01:00 |
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da3b23d502
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indicated hardcoded active site residues for pnca
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2020-10-06 19:12:32 +01:00 |
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10e1baee82
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script to subset data for dnds cals
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2020-10-06 19:11:34 +01:00 |
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4157b8137c
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added barplot_subcolours_aa_combined.R to combine and label these plots
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2020-10-06 18:43:20 +01:00 |
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861b2a7ee1
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adjusted x axis position label for barplot_subcols_aa_LIG.R
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2020-10-06 18:42:24 +01:00 |
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4368c061c7
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generated labelled ps_plots_combined.R and capital "P" for position in barplots coloured aa for Lig
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2020-10-06 18:15:50 +01:00 |
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315f7b1e0e
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output corr plots with coloured dots
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2020-10-06 17:47:24 +01:00 |
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0cdc507ba5
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updated TASK in hist_af_or_combined.R
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2020-10-06 16:43:59 +01:00 |
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711781933c
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renamed dist_plots.R to dist_plots_check.R as its exploratory
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2020-10-06 16:39:24 +01:00 |
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cc8443c7d4
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added hist_af_or_combined.R to generate plots for output and moved previosu run to scratch_plots/
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2020-10-06 16:33:25 +01:00 |
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9b9ee07801
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added hist_af.R
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2020-10-06 15:07:42 +01:00 |
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66db9ddd9c
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updated .gitignore
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2020-10-06 09:55:19 +01:00 |
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3ecba79eb9
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added basic_barplots_foldx.R for supp figure
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2020-10-06 09:53:34 +01:00 |
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b63bbd6f15
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moved not required plots to scratch
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2020-10-06 09:52:54 +01:00 |
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923cad81b5
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saving predictions script
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2020-09-30 14:09:08 +01:00 |
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4f32ffd3b6
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added predictions for ps and lig and output to results
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2020-09-30 13:12:05 +01:00 |
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c95db27b06
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added prediction.R to do logistic regression
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2020-09-30 10:04:49 +01:00 |
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8e16b2635e
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added ../data_extraction_epistasis.py for getting list for epistasis work
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2020-09-29 16:09:54 +01:00 |
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6354caae3c
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added corr_data.R corr_PS_LIG_all.R corr_PS_LIG_v2.R
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2020-09-29 16:08:25 +01:00 |
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9ba7b32c14
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added dist_plot.R to generate plots for writing results
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2020-09-23 19:24:42 +01:00 |
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a0755eeab6
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added more analysis in extreme_muts.R to be tidied later
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2020-09-23 19:23:34 +01:00 |
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5f10ad8075
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added fold and duet agreement to extreme_muts.R
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2020-09-23 11:20:22 +01:00 |
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4398c049ca
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added foldx scaled and foldx outcome to plotting_data.R
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2020-09-23 11:12:41 +01:00 |
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5deb12187e
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updated extreme_muts.R with number of budding hotspots and mult muts numbers
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2020-09-23 11:02:13 +01:00 |
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3318f3f85a
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Update README.md
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2020-09-21 18:11:24 +01:00 |
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e0561f29c0
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Update README.md
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2020-09-21 18:11:10 +01:00 |
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7c6581f19a
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Update README.md
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2020-09-21 18:09:55 +01:00 |
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e8aff6129a
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Update README.md
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2020-09-21 18:08:49 +01:00 |
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7243f0c7e7
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Update README.md
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2020-09-21 18:07:58 +01:00 |
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759efd876d
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updated gitignore for more tidying
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2020-09-21 17:58:51 +01:00 |
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2c013124ad
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updated gitignore to tidyup
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2020-09-21 17:54:54 +01:00 |
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1cf1f4e70e
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remove unneeded dir
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2020-09-21 17:49:19 +01:00 |
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759054de35
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added ks_test_all_PS.R, ks_test_dr_PS.R, ks_test_dr_others_PS.R
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2020-09-21 17:46:22 +01:00 |
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535a5e86c0
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saving combined bubble plot with labels
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2020-09-18 18:19:55 +01:00 |
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ad447b62df
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updated .gitignore to include .RData
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2020-09-18 18:10:23 +01:00 |
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07fa82520e
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added script basic_barplots_combined.R to combine basic barplots for PS and lig
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2020-09-18 18:09:24 +01:00 |
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0c5ef2e72c
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saving work
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2020-09-18 18:07:48 +01:00 |
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c5266770af
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added ggcorr all plot figure for supp
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2020-09-18 12:46:12 +01:00 |
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c0b8d56fea
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added ggcorr plots combined for all params
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2020-09-18 11:56:19 +01:00 |
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9ae9042033
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saving work
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2020-09-18 11:55:08 +01:00 |
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dcf3d474e7
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updated Header file and saving work
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2020-09-17 20:12:08 +01:00 |
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6e991e928a
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logo_combined.R, outputs logo plot with multiple mutations and log_or
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2020-09-17 20:01:57 +01:00 |
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