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dynamut scripts and minor change dir for rd_df.py

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Tanushree Tunstall 2021-02-10 15:40:33 +00:00
parent 21451789e7
commit e3189df74b
3 changed files with 8 additions and 10 deletions
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12
dynamut/get_results.py
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@ -5,8 +5,6 @@ Created on Wed Aug 19 14:33:51 2020
@author: tanu
"""
#%% load packages
import os,sys
import subprocess
@ -20,15 +18,15 @@ from pandas.api.types import is_string_dtype
from pandas.api.types import is_numeric_dtype
#%%============================================================================
#streptomycin/gid_complex.pdb
host_dynamut = 'http://biosig.unimelb.edu.au/dynamut'
host = 'http://biosig.unimelb.edu.au/dynamut'
pred_dynamut_batch = '/results_prediction/161287964015'
result_id = re.search( r"([0-9]+)$", pred_dynamut).group(0)
batch_result_url = host_dynamut + pred_dynamut_batch
batch_result_url = host + pred_dynamut_batch
mut = 'S2C'
single_url = host_dynamut + '/single_results/' + str(result_id)
single_result_url = host_dynamut + '/single_results/' + str(result_id) + '/' + mut
single_url = host + '/single_results/' + str(result_id)
single_result_url = host + '/single_results/' + str(result_id) + '/' + mut
print(single_result_url)
#%%============================================================================
@ -62,7 +60,7 @@ print(results_df)
#%% for loop
single_url = host_dynamut + '/single_results/' + str(result_id)
single_url = host + '/single_results/' + str(result_id)
muts = ["S2C", "S2F"]