From e3189df74b541c317a0d1d6c9c770ec7b95469ee Mon Sep 17 00:00:00 2001
From: Tanushree Tunstall <tanu@tunstall.in>
Date: Wed, 10 Feb 2021 15:40:33 +0000
Subject: [PATCH] dynamut scripts and minor change dir for rd_df.py

---
 dynamut/get_results.py  | 12 +++++-------
 dynamut/reading_muts.py |  4 ++--
 scripts/rd_df.py        |  2 +-
 3 files changed, 8 insertions(+), 10 deletions(-)

diff --git a/dynamut/get_results.py b/dynamut/get_results.py
index 8ad2eef..6d30e79 100755
--- a/dynamut/get_results.py
+++ b/dynamut/get_results.py
@@ -5,8 +5,6 @@ Created on Wed Aug 19 14:33:51 2020
 
 @author: tanu
 """
-
-
 #%% load packages
 import os,sys
 import subprocess
@@ -20,15 +18,15 @@ from pandas.api.types import is_string_dtype
 from pandas.api.types import is_numeric_dtype
 #%%============================================================================
 #streptomycin/gid_complex.pdb
-host_dynamut = 'http://biosig.unimelb.edu.au/dynamut'
+host = 'http://biosig.unimelb.edu.au/dynamut'
 pred_dynamut_batch = '/results_prediction/161287964015'
 result_id = re.search( r"([0-9]+)$", pred_dynamut).group(0)
 
-batch_result_url = host_dynamut + pred_dynamut_batch
+batch_result_url = host + pred_dynamut_batch
 
 mut = 'S2C'
-single_url = host_dynamut + '/single_results/' + str(result_id)
-single_result_url = host_dynamut + '/single_results/' + str(result_id) + '/' + mut
+single_url = host + '/single_results/' + str(result_id)
+single_result_url = host + '/single_results/' + str(result_id) + '/' + mut
 print(single_result_url)
 
 #%%============================================================================
@@ -62,7 +60,7 @@ print(results_df)
 
 #%% for loop
 
-single_url = host_dynamut + '/single_results/' + str(result_id)
+single_url = host + '/single_results/' + str(result_id)
      
 muts = ["S2C", "S2F"]
 
diff --git a/dynamut/reading_muts.py b/dynamut/reading_muts.py
index 6f62ff9..c03a0a1 100755
--- a/dynamut/reading_muts.py
+++ b/dynamut/reading_muts.py
@@ -30,7 +30,7 @@ chunks = [all_muts[i:i+n] for i in range(0,all_muts.shape[0],n)]
 
 muts_list = all_muts[0].values.tolist()
 
-host_dynamut = 'http://biosig.unimelb.edu.au/dynamut'
+host = 'http://biosig.unimelb.edu.au/dynamut'
 mut_prediction = '/prediction'
 
-submit_url = host_dynamut + mut_prediction
+submit_url = host + mut_prediction
diff --git a/scripts/rd_df.py b/scripts/rd_df.py
index 8794792..7eab903 100755
--- a/scripts/rd_df.py
+++ b/scripts/rd_df.py
@@ -26,7 +26,7 @@ homedir = os.path.expanduser('~')
 
 # set working dir
 os.getcwd()
-os.chdir(homedir + '/git/LSHTM_analysis/meta_data_analysis')
+os.chdir(homedir + '/git/LSHTM_analysis/scripts')
 os.getcwd()
 #=======================================================================
 #%% command line args