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optimised run_7030.py to generate ouput from dict now that the processfunction and parameter dicts have been added

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Tanushree Tunstall 2022-06-24 15:40:18 +01:00
parent 7dc7e25016
commit b37a950fec
12 changed files with 180 additions and 128408 deletions
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scripts/ml/running_ml_scripts.txt
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@ -11,6 +11,7 @@ time ./run_7030.py -g katG -d isoniazid 2>&1 | tee log_katg_7030.txt
time ./run_7030.py -g rpoB -d rifampicin 2>&1 | tee log_rpob_7030.txt
time ./run_7030.py -g gid -d streptomycin 2>&1 | tee log_gid_7030.txt
time ./run_7030.py -g alr -d cycloserine 2>&1 | tee log_alr_7030.txt
# alr: # ERROR, as expected, too few values!
# gid: problems
########################################################################
@ -73,9 +74,11 @@ time ./run_7030.py -g alr -d cycloserine 2>&1 | tee log_alr_7030.txt
########################################################################
########################################################################
# running feature selection
# Split:70/30
time ./run_FS.py -g pncA -d pyrazinamide 2>&1 | tee log_FS_pnca_7030.txt
real 338m26.705s
user 1946m12.173s
sys 189m40.122s