84 lines
2.6 KiB
Text
84 lines
2.6 KiB
Text
=================================
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# Split: 70/30
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# All features including AA index
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# Date: 22/06/2022
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# captures error: 2>$1
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# omitted drtype_labels
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=================================
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time ./run_7030.py -g pncA -d pyrazinamide 2>&1 | tee log_pnca_7030.txt
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time ./run_7030.py -g embB -d ethambutol 2>&1 | tee log_embb_7030.txt
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time ./run_7030.py -g katG -d isoniazid 2>&1 | tee log_katg_7030.txt
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time ./run_7030.py -g rpoB -d rifampicin 2>&1 | tee log_rpob_7030.txt
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time ./run_7030.py -g gid -d streptomycin 2>&1 | tee log_gid_7030.txt
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time ./run_7030.py -g alr -d cycloserine 2>&1 | tee log_alr_7030.txt
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# alr: # ERROR, as expected, too few values!
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# gid: problems
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########################################################################
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=================================
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# Split: 80/20
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# All features including AA index
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# Date: 17/05/2022, 18:48
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# captures error: 2>$1
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=================================
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########################################################################
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=================================
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# Split: scaling law
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# All features including AA index
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# Date: 17/05/2022, 18:48
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# captures error: 2>$1
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=================================
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########################################################################
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=================================
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# Split: REVERSE training
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# imputed values: training set
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# actual values: blind set
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# All features including AA index
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# Date: 18/05/2022
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# captures error: 2>$1
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=================================
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########################################################################
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# COMPLETE Data: actual + na i.e imputed
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########################################################################
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=================================
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# Split: 70/30 [COMPLETE DATA]
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# All features including AA index
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# Date: 18/05/2022
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# captures error: 2>$1
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=================================
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########################################################################
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=================================
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# Split: 80/20 [COMPLETE DATA]
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# All features including AA index
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# Date: 18/05/2022
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# captures error: 2>$1
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=================================
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=================================
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# Split: scaling law [COMPLETE DATA]
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# All features including AA index
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# Date: 18/05/2022
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# captures error: 2>$1
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=================================
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########################################################################
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########################################################################
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########################################################################
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# running feature selection
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# Split:70/30
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time ./run_FS.py -g pncA -d pyrazinamide 2>&1 | tee log_FS_pnca_7030.txt
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real 338m26.705s
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user 1946m12.173s
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sys 189m40.122s
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