minor cody tidy up

dynamut/examples.py

@@ -8,16 +8,16 @@ Created on Fri Feb 12 12:15:26 2021
 import os
 homedir = os.path.expanduser('~')
 os.chdir (homedir + '/git/LSHTM_analysis/dynamut')
-from get_results import *
 from submit import *
+from get_results import *
 #%%#####################################################################
 #EXAMPLE RUN for different stages
 #=====================
 # STAGE: submit.py
 #=====================
 my_host = 'http://biosig.unimelb.edu.au'
-my_prediction_url = f"{host}/dynamut/prediction_list"
-print(prediction_url)
+my_prediction_url = f"{my_host}/dynamut/prediction_list"
+print(my_prediction_url)
 
 my_outdir = homedir + '/git/LSHTM_analysis/dynamut'
 my_chain = 'A'

dynamut/submit.py

@@ -41,15 +41,15 @@ def submit_dynamut(host_url
     @param chain: single-letter(caps)
 	@type chr
 
+    @param email_address: email address to inform of results
+	@type chr
+
 	@param prediction_url: dynamut url for prediction
 	@type string
        
     @param output_dir: output dir
 	@type string
     
-    @param outfile_suffix: outfile_suffix
-	@type string, default is batch no.
-    
     @param outfile_suffix: to append to outfile
 	@type string