From b2397ea99d93484876bf92b3be06986535f6372d Mon Sep 17 00:00:00 2001
From: Tanushree Tunstall <tanu@tunstall.in>
Date: Fri, 12 Feb 2021 16:50:34 +0000
Subject: [PATCH] minor cody tidy up

---
 dynamut/examples.py | 10 +++++-----
 dynamut/submit.py   |  8 ++++----
 2 files changed, 9 insertions(+), 9 deletions(-)

diff --git a/dynamut/examples.py b/dynamut/examples.py
index 441ca31..4d635ce 100644
--- a/dynamut/examples.py
+++ b/dynamut/examples.py
@@ -8,16 +8,16 @@ Created on Fri Feb 12 12:15:26 2021
 import os
 homedir = os.path.expanduser('~')
 os.chdir (homedir + '/git/LSHTM_analysis/dynamut')
-from get_results import *
 from submit import *
+from get_results import *
 #%%#####################################################################
 #EXAMPLE RUN for different stages
 #=====================
 # STAGE: submit.py
 #=====================
 my_host = 'http://biosig.unimelb.edu.au'
-my_prediction_url = f"{host}/dynamut/prediction_list"
-print(prediction_url)
+my_prediction_url = f"{my_host}/dynamut/prediction_list"
+print(my_prediction_url)
 
 my_outdir = homedir + '/git/LSHTM_analysis/dynamut'
 my_chain = 'A'
@@ -40,7 +40,7 @@ submit_dynamut(host_url = my_host
 , outfile_suffix = my_suffix) 
 #%%###################################################################
 #=====================
-# STAGE:get_results.py
+# STAGE: get_results.py
 #=====================
 my_host = 'http://biosig.unimelb.edu.au'
 my_outdir = homedir + '/git/LSHTM_analysis/dynamut'
@@ -68,4 +68,4 @@ get_results(my_url_file_single
             , host_url = my_host
             , output_dir = my_outdir
             , outfile_suffix = my_suffix)
-#%%###################################################################
\ No newline at end of file
+#%%###################################################################
diff --git a/dynamut/submit.py b/dynamut/submit.py
index 1a10c4a..2c66d90 100644
--- a/dynamut/submit.py
+++ b/dynamut/submit.py
@@ -41,19 +41,19 @@ def submit_dynamut(host_url
     @param chain: single-letter(caps)
 	@type chr
 
+    @param email_address: email address to inform of results
+	@type chr
+
 	@param prediction_url: dynamut url for prediction
 	@type string
        
     @param output_dir: output dir
 	@type string
     
-    @param outfile_suffix: outfile_suffix
-	@type string, default is batch no.
-    
     @param outfile_suffix: to append to outfile
 	@type string
     
-    @return writes a .txt file containing url for the snps processed with user provided suffix in filename
+    @return writes a .txt file containing url for the snps processed with user provided suffix in filename 
     @type string
     """