tanu/LSHTM_analysis
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changed dir to allow ml script to import functions

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This commit is contained in:
Tanushree Tunstall 2022-06-17 18:27:20 +01:00
parent e6d3692445
commit 91e868736c
5 changed files with 10 additions and 10 deletions
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4
scripts/ml/alr_config.py
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@ -13,7 +13,7 @@ drug = 'cycloserine'
#total_mtblineage_uc = 8 #total_mtblineage_uc = 8
homedir = os.path.expanduser("~") homedir = os.path.expanduser("~")
os.chdir( homedir + '/git/ML_AI_training/') os.chdir( homedir + '/git/LSHTM_analysis/scripts/ml/')
#--------------------------- #---------------------------
# Version 1: no AAindex # Version 1: no AAindex
@ -30,7 +30,7 @@ from ml_data import *
#from UQ_yc_RunAllClfs import run_all_ML #from UQ_yc_RunAllClfs import run_all_ML
# TT run all ML clfs: baseline mode # TT run all ML clfs: baseline mode
from UQ_MultModelsCl import MultModelsCl from MultModelsCl import MultModelsCl
#%%########################################################################### #%%###########################################################################

4
scripts/ml/embb_config.py
View file

@ -13,7 +13,7 @@ drug = 'ethambutol'
#total_mtblineage_uc = 8 #total_mtblineage_uc = 8
homedir = os.path.expanduser("~") homedir = os.path.expanduser("~")
os.chdir( homedir + '/git/ML_AI_training/') os.chdir( homedir + '/git/LSHTM_analysis/scripts/ml/')
#--------------------------- #---------------------------
# Version 1: no AAindex # Version 1: no AAindex
@ -30,7 +30,7 @@ from ml_data import *
#from UQ_yc_RunAllClfs import run_all_ML #from UQ_yc_RunAllClfs import run_all_ML
# TT run all ML clfs: baseline mode # TT run all ML clfs: baseline mode
from UQ_MultModelsCl import MultModelsCl from MultModelsCl import MultModelsCl
#%%########################################################################### #%%###########################################################################

4
scripts/ml/gid_config.py
View file

@ -13,7 +13,7 @@ drug = 'streptomycin'
#total_mtblineage_uc = 8 #total_mtblineage_uc = 8
homedir = os.path.expanduser("~") homedir = os.path.expanduser("~")
os.chdir( homedir + '/git/ML_AI_training/') os.chdir( homedir + '/git/LSHTM_analysis/scripts/ml/')
#--------------------------- #---------------------------
# Version 1: no AAindex # Version 1: no AAindex
@ -30,7 +30,7 @@ from ml_data import *
#from UQ_yc_RunAllClfs import run_all_ML #from UQ_yc_RunAllClfs import run_all_ML
# TT run all ML clfs: baseline mode # TT run all ML clfs: baseline mode
from UQ_MultModelsCl import MultModelsCl from MultModelsCl import MultModelsCl
#%%########################################################################### #%%###########################################################################

4
scripts/ml/katg_config.py
View file

@ -13,7 +13,7 @@ drug = 'isoniazid'
#total_mtblineage_uc = 8 #total_mtblineage_uc = 8
homedir = os.path.expanduser("~") homedir = os.path.expanduser("~")
os.chdir( homedir + '/git/ML_AI_training/') os.chdir( homedir + '/git/LSHTM_analysis/scripts/ml/')
#--------------------------- #---------------------------
# Version 1: no AAindex # Version 1: no AAindex
@ -30,7 +30,7 @@ from ml_data import *
#from UQ_yc_RunAllClfs import run_all_ML #from UQ_yc_RunAllClfs import run_all_ML
# TT run all ML clfs: baseline mode # TT run all ML clfs: baseline mode
from UQ_MultModelsCl import MultModelsCl from MultModelsCl import MultModelsCl
#%%########################################################################### #%%###########################################################################

4
scripts/ml/rpob_config.py
View file

@ -13,7 +13,7 @@ drug = 'rifampicin'
#total_mtblineage_uc = 8 #total_mtblineage_uc = 8
homedir = os.path.expanduser("~") homedir = os.path.expanduser("~")
os.chdir( homedir + '/git/ML_AI_training/') os.chdir( homedir + '/git/LSHTM_analysis/scripts/ml/')
#--------------------------- #---------------------------
# Version 1: no AAindex # Version 1: no AAindex
@ -30,7 +30,7 @@ from ml_data import *
#from UQ_yc_RunAllClfs import run_all_ML #from UQ_yc_RunAllClfs import run_all_ML
# TT run all ML clfs: baseline mode # TT run all ML clfs: baseline mode
from UQ_MultModelsCl import MultModelsCl from MultModelsCl import MultModelsCl
#%%########################################################################### #%%###########################################################################