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added avg affinity and stability cols with mask for avg affinity

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Tanushree Tunstall 2022-09-01 13:04:37 +01:00
parent e03ce277b7
commit 56b71c6ca2
2 changed files with 51 additions and 5 deletions
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44
scripts/ml/ml_functions/TEST_GetMLData.py
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@ -5,10 +5,54 @@ Created on Thu Sep 1 12:22:27 2022
@author: tanu
"""
getmldata(gene = "alr"
, drug = "cycloserine"
, data_combined_model = False
, use_or = False
, omit_all_genomic_features = False
, write_maskfile = True
, write_outfile = False)
getmldata(gene = "embB"
, drug = "ethambutol"
, data_combined_model = False
, use_or = False
, omit_all_genomic_features = False
, write_maskfile = True
, write_outfile = False)
getmldata(gene = "gid"
, drug = "streptomycin"
, data_combined_model = False
, use_or = False
, omit_all_genomic_features = False
, write_maskfile = True
, write_outfile = False)
getmldata(gene = "katG"
, drug = "isoniazid"
, data_combined_model = False
, use_or = False
, omit_all_genomic_features = False
, write_maskfile = True
, write_outfile = False)
getmldata(gene = "rpoB"
, drug = "rifampicin"
, data_combined_model = False
, use_or = False
, omit_all_genomic_features = False
, write_maskfile = True
, write_outfile = False)
getmldata(gene = "pncA"
, drug = "pyrazinamide"
, data_combined_model = False
, use_or = False
, omit_all_genomic_features = False
, write_maskfile = True
, write_outfile = False)