LSHTM_analysis/scripts/ml/ml_functions/TEST_GetMLData.py

58 lines
No EOL
1.5 KiB
Python

#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Thu Sep 1 12:22:27 2022
@author: tanu
"""
getmldata(gene = "alr"
, drug = "cycloserine"
, data_combined_model = False
, use_or = False
, omit_all_genomic_features = False
, write_maskfile = True
, write_outfile = False)
getmldata(gene = "embB"
, drug = "ethambutol"
, data_combined_model = False
, use_or = False
, omit_all_genomic_features = False
, write_maskfile = True
, write_outfile = False)
getmldata(gene = "gid"
, drug = "streptomycin"
, data_combined_model = False
, use_or = False
, omit_all_genomic_features = False
, write_maskfile = True
, write_outfile = False)
getmldata(gene = "katG"
, drug = "isoniazid"
, data_combined_model = False
, use_or = False
, omit_all_genomic_features = False
, write_maskfile = True
, write_outfile = False)
getmldata(gene = "rpoB"
, drug = "rifampicin"
, data_combined_model = False
, use_or = False
, omit_all_genomic_features = False
, write_maskfile = True
, write_outfile = False)
getmldata(gene = "pncA"
, drug = "pyrazinamide"
, data_combined_model = False
, use_or = False
, omit_all_genomic_features = False
, write_maskfile = True
, write_outfile = False)