tanu/LSHTM_analysis
1
0
Fork 0
Code Issues Pull requests Releases Wiki Activity

added metadata output for running multiple models

Browse source
This commit is contained in:
Tanushree Tunstall 2022-06-23 21:25:00 +01:00
parent 5dea35f97c
commit 4fe62c072b
7 changed files with 325 additions and 88 deletions
Download patch file Download diff file Expand all files Collapse all files

20
scripts/ml/running_ml_scripts.txt
View file

@ -5,12 +5,12 @@
# captures error: 2>$1
# omitted drtype_labels
=================================
./run_7030.py -g pncA -d pyrazinamide 2>&1 | tee log_pnca_7030.txt
./run_7030.py -g embB -d ethambutol 2>&1 | tee log_embb_7030.txt
./run_7030.py -g katG -d isoniazid 2>&1 | tee log_katg_7030.txt
./run_7030.py -g rpoB -d rifampicin 2>&1 | tee log_rpob_7030.txt
./run_7030.py -g gid -d streptomycin 2>&1 | tee log_gid_7030.txt
./run_7030.py -g alr -d cycloserine 2>&1 | tee log_alr_7030.txt
time ./run_7030.py -g pncA -d pyrazinamide 2>&1 | tee log_pnca_7030.txt
time ./run_7030.py -g embB -d ethambutol 2>&1 | tee log_embb_7030.txt
time ./run_7030.py -g katG -d isoniazid 2>&1 | tee log_katg_7030.txt
time ./run_7030.py -g rpoB -d rifampicin 2>&1 | tee log_rpob_7030.txt
time ./run_7030.py -g gid -d streptomycin 2>&1 | tee log_gid_7030.txt
time ./run_7030.py -g alr -d cycloserine 2>&1 | tee log_alr_7030.txt
# alr: # ERROR, as expected, too few values!
# gid: problems
########################################################################
@ -69,5 +69,13 @@
# Date: 18/05/2022
# captures error: 2>$1
=================================
########################################################################
########################################################################
########################################################################
# running feature selection
# Split:70/30
time ./run_FS.py -g pncA -d pyrazinamide 2>&1 | tee log_FS_pnca_7030.txt