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resuming work after conference

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This commit is contained in:
Tanushree Tunstall 2021-08-05 16:54:34 +01:00
parent a9119d7f03
commit 4733ec9db0
1 changed files with 2 additions and 2 deletions
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4
scripts/plotting/get_plotting_dfs.R
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@ -41,8 +41,8 @@ import_dirs(drug, gene)
#--------------------------- #---------------------------
if (!exists("infile_params") && exists("gene")){ if (!exists("infile_params") && exists("gene")){
#if (!is.character(infile_params) && exists("gene")){ # when running as cmd #if (!is.character(infile_params) && exists("gene")){ # when running as cmd
in_filename_params = paste0(tolower(gene), "_all_params.csv") #for pncA #in_filename_params = paste0(tolower(gene), "_all_params.csv") #for pncA
#in_filename_params = paste0(tolower(gene), "_comb_afor.csv") # part combined for gid in_filename_params = paste0(tolower(gene), "_comb_afor.csv") # part combined for gid
infile_params = paste0(outdir, "/", in_filename_params) infile_params = paste0(outdir, "/", in_filename_params)
cat("\nInput file for mcsm comb data not specified, assuming filename: ", infile_params, "\n") cat("\nInput file for mcsm comb data not specified, assuming filename: ", infile_params, "\n")
} }