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Merge branch 'master' of https://git.tunstall.in/tanu/LSHTM_analysis

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This commit is contained in:
Tanushree Tunstall 2020-01-31 15:34:58 +00:00
commit 340f490d70
2 changed files with 25 additions and 2 deletions
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23
mcsm_analysis/pyrazinamide/scripts/.Rhistory Normal file
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@ -0,0 +1,23 @@
getwd()
setwd("~/git/LSHTM_analysis/mcsm_analysis/pyrazinamide/scripts/plotting")
getwd()
source("../combining_two_df.R")
source("../Header_TT.R")
getwd()
setwd("~/git/LSHTM_analysis/mcsm_analysis/pyrazinamide/scripts/plotting")
getwd()
source("../Header_TT.R")
source("../combining_two_df.R")
#<<<<<<<<<<<<<<<<<<<<<<<<<
# REASSIGNMENT
my_df = merged_df3_comp
# delete variables not required
rm(merged_df2, merged_df2_comp, merged_df3, merged_df3_comp)
# quick checks
colnames(my_df)
str(my_df)
#<<<<<<<<<<<<<<<<<<<<<<<<
# REASSIGNMENT
df = my_df
rm(my_df)
table(df$DUET_outcome)

4
mcsm_analysis/pyrazinamide/scripts/plotting/corr_plots_v3_PS.R
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@ -64,10 +64,10 @@ str(my_df)
# Data for plots
#===================
#<<<<<<<<<<<<<<<<<<<<<<<<
#!!!!!!!!!!!!!!!!!!!!!!!!
# REASSIGNMENT
df = my_df
#<<<<<<<<<<<<<<<<<<<<<<<<<
#!!!!!!!!!!!!!!!!!!!!!!!!
rm(my_df)