diff --git a/mcsm_analysis/pyrazinamide/scripts/.Rhistory b/mcsm_analysis/pyrazinamide/scripts/.Rhistory
new file mode 100644
index 0000000..18dd768
--- /dev/null
+++ b/mcsm_analysis/pyrazinamide/scripts/.Rhistory
@@ -0,0 +1,23 @@
+getwd()
+setwd("~/git/LSHTM_analysis/mcsm_analysis/pyrazinamide/scripts/plotting")
+getwd()
+source("../combining_two_df.R")
+source("../Header_TT.R")
+getwd()
+setwd("~/git/LSHTM_analysis/mcsm_analysis/pyrazinamide/scripts/plotting")
+getwd()
+source("../Header_TT.R")
+source("../combining_two_df.R")
+#<<<<<<<<<<<<<<<<<<<<<<<<<
+# REASSIGNMENT
+my_df  = merged_df3_comp
+# delete variables not required
+rm(merged_df2, merged_df2_comp, merged_df3, merged_df3_comp)
+# quick checks
+colnames(my_df)
+str(my_df)
+#<<<<<<<<<<<<<<<<<<<<<<<<
+# REASSIGNMENT
+df  = my_df
+rm(my_df)
+table(df$DUET_outcome)
diff --git a/mcsm_analysis/pyrazinamide/scripts/plotting/corr_plots_v3_PS.R b/mcsm_analysis/pyrazinamide/scripts/plotting/corr_plots_v3_PS.R
index f3a507e..0059bca 100644
--- a/mcsm_analysis/pyrazinamide/scripts/plotting/corr_plots_v3_PS.R
+++ b/mcsm_analysis/pyrazinamide/scripts/plotting/corr_plots_v3_PS.R
@@ -64,10 +64,10 @@ str(my_df)
 # Data for plots
 #===================
 
-#<<<<<<<<<<<<<<<<<<<<<<<<
+#!!!!!!!!!!!!!!!!!!!!!!!!
 # REASSIGNMENT
 df  = my_df
-#<<<<<<<<<<<<<<<<<<<<<<<<<
+#!!!!!!!!!!!!!!!!!!!!!!!!
 
 rm(my_df)