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running ml_iterator_CV for all targets with different CV threholds

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Tanushree Tunstall 2022-09-01 16:29:32 +01:00
parent 80b4a1850c
commit 338dd329e9
1 changed files with 6 additions and 6 deletions
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12
scripts/ml/ml_iterator_CVs.py
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@ -15,8 +15,8 @@ homedir = os.path.expanduser("~")
sys.path.append(homedir + '/git/LSHTM_analysis/scripts/ml/ml_functions') sys.path.append(homedir + '/git/LSHTM_analysis/scripts/ml/ml_functions')
sys.path sys.path
############################################################################### ###############################################################################
#outdir = homedir + '/git/LSHTM_ML/output/genes/' outdir = homedir + '/git/LSHTM_ML/output/genes/'
outdir = homedir + '/git/Misc/' #outdir = homedir + '/git/Misc/'
#==================== #====================
# Import ML functions # Import ML functions
@ -44,10 +44,10 @@ gene_model_paramD = {'data_combined_model' : False
ml_gene_drugD = { ml_gene_drugD = {
'pncA' : 'pyrazinamide' 'pncA' : 'pyrazinamide'
#, 'embB' : 'ethambutol' , 'embB' : 'ethambutol'
#, 'katG' : 'isoniazid' , 'katG' : 'isoniazid'
#, 'rpoB' : 'rifampicin' , 'rpoB' : 'rifampicin'
#, 'gid' : 'streptomycin' , 'gid' : 'streptomycin'
} }
gene_dataD={} gene_dataD={}