From 338dd329e965fe9d4ae0a2fdf6a85787fe89205e Mon Sep 17 00:00:00 2001
From: Tanushree Tunstall <tanu@tunstall.in>
Date: Thu, 1 Sep 2022 16:29:32 +0100
Subject: [PATCH] running ml_iterator_CV for all targets with different CV
 threholds

---
 scripts/ml/ml_iterator_CVs.py | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/scripts/ml/ml_iterator_CVs.py b/scripts/ml/ml_iterator_CVs.py
index 19db5f2..f562859 100755
--- a/scripts/ml/ml_iterator_CVs.py
+++ b/scripts/ml/ml_iterator_CVs.py
@@ -15,8 +15,8 @@ homedir = os.path.expanduser("~")
 sys.path.append(homedir + '/git/LSHTM_analysis/scripts/ml/ml_functions')
 sys.path
 ###############################################################################
-#outdir = homedir + '/git/LSHTM_ML/output/genes/'
-outdir = homedir + '/git/Misc/'
+outdir = homedir + '/git/LSHTM_ML/output/genes/'
+#outdir = homedir + '/git/Misc/'
 
 #====================
 # Import ML functions 
@@ -44,10 +44,10 @@ gene_model_paramD = {'data_combined_model'       : False
 
 ml_gene_drugD = {
         'pncA'   : 'pyrazinamide'
-        #, 'embB'   : 'ethambutol'
-        #, 'katG' : 'isoniazid'
-        #, 'rpoB' : 'rifampicin'
-        #, 'gid'  : 'streptomycin'
+        , 'embB' : 'ethambutol'
+        , 'katG' : 'isoniazid'
+        , 'rpoB' : 'rifampicin'
+        , 'gid'  : 'streptomycin'
                  }
 gene_dataD={}