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adde tests scripts for logoP and logoP_snp.R

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Tanushree Tunstall 2022-01-14 16:10:49 +00:00
parent f640087922
commit 0334188801
2 changed files with 53 additions and 0 deletions
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28
scripts/functions/tests/test_logoP.R Normal file
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#source("~/git/LSHTM_analysis/config/gid.R")
#source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
LogoPlotCustomH (plot_df = merged_df3
, x_axis_colname = "position"
, y_axis_colname = "or_mychisq"
, symbol_colname = "mutant_type"
, y_axis_log = T
, log_value = log10
, rm_empty_pos = T
, my_logo_col = 'chemistry'
, x_lab = "Position"
, y_lab = "Odds Ratio"
, x_ats = 12 # text size
, x_tangle = 90 # text angle
, y_ats = 22
, y_tangle = 0
, x_tts = 19 # title size
, y_tts = 22
#, leg_pos = c(0.05,-0.12)
, leg_pos = "top"
, leg_dir = "horizontal"
, leg_ts = 15 # leg text size
, leg_tts = 16 # leg title size
)

25
scripts/functions/tests/test_logoP_snp.R Normal file
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#source("~/git/LSHTM_analysis/config/gid.R")
#source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
LogoPlotSnps(plot_df = merged_df3
, x_axis_colname = "position"
, symbol_mut_colname = "mutant_type"
, symbol_wt_colname = "mutant_type"
, omit_snp_count = c(0)# can be 1, 2, etc.
, my_logo_col = "chemistry"
, x_lab = "Position"
, y_lab = "Count"
, x_ats = 1 # text size
, x_tangle = 90 # text angle
, y_ats = 1
, y_tangle = 0
, x_tts = 20 # title size
, y_tts = 20
, leg_pos = "top" # can be top, left, right and bottom or c(0.8, 0.9)
, leg_dir = "horizontal" #can be vertical or horizontal
, leg_ts = 20 # leg text size
, leg_tts = 16 # leg title size
)