25 lines
907 B
R
25 lines
907 B
R
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#source("~/git/LSHTM_analysis/config/gid.R")
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#source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
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LogoPlotSnps(plot_df = merged_df3
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, x_axis_colname = "position"
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, symbol_mut_colname = "mutant_type"
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, symbol_wt_colname = "mutant_type"
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, omit_snp_count = c(0)# can be 1, 2, etc.
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, my_logo_col = "chemistry"
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, x_lab = "Position"
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, y_lab = "Count"
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, x_ats = 1 # text size
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, x_tangle = 90 # text angle
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, y_ats = 1
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, y_tangle = 0
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, x_tts = 20 # title size
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, y_tts = 20
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, leg_pos = "top" # can be top, left, right and bottom or c(0.8, 0.9)
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, leg_dir = "horizontal" #can be vertical or horizontal
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, leg_ts = 20 # leg text size
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, leg_tts = 16 # leg title size
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)
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