adde tests scripts for logoP and logoP_snp.R
This commit is contained in:
parent
f640087922
commit
0334188801
2 changed files with 53 additions and 0 deletions
25
scripts/functions/tests/test_logoP_snp.R
Normal file
25
scripts/functions/tests/test_logoP_snp.R
Normal file
|
@ -0,0 +1,25 @@
|
|||
|
||||
#source("~/git/LSHTM_analysis/config/gid.R")
|
||||
#source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
|
||||
|
||||
|
||||
LogoPlotSnps(plot_df = merged_df3
|
||||
, x_axis_colname = "position"
|
||||
, symbol_mut_colname = "mutant_type"
|
||||
, symbol_wt_colname = "mutant_type"
|
||||
, omit_snp_count = c(0)# can be 1, 2, etc.
|
||||
|
||||
, my_logo_col = "chemistry"
|
||||
, x_lab = "Position"
|
||||
, y_lab = "Count"
|
||||
, x_ats = 1 # text size
|
||||
, x_tangle = 90 # text angle
|
||||
, y_ats = 1
|
||||
, y_tangle = 0
|
||||
, x_tts = 20 # title size
|
||||
, y_tts = 20
|
||||
, leg_pos = "top" # can be top, left, right and bottom or c(0.8, 0.9)
|
||||
, leg_dir = "horizontal" #can be vertical or horizontal
|
||||
, leg_ts = 20 # leg text size
|
||||
, leg_tts = 16 # leg title size
|
||||
)
|
Loading…
Add table
Add a link
Reference in a new issue