43 lines
1.7 KiB
R
Executable file
43 lines
1.7 KiB
R
Executable file
#!/usr/bin/Rscript
|
|
getwd()
|
|
setwd("~/git/mosaic_2020/")
|
|
getwd()
|
|
###############################################################
|
|
source("boxplot_stat_function.R")
|
|
source("plot_data.R")
|
|
#=============
|
|
# Output TEST
|
|
#=============
|
|
my_sample_name = "SAM"
|
|
to_remove = c("ifna2a", "il29")
|
|
lf_fp_sam2 = lf_fp_sam[!lf_fp_sam$mediator%in%to_remove,]
|
|
lf_fp_sam3 = lf_fp_sam[lf_fp_sam$mediator%in%to_remove,]
|
|
|
|
foo = doMyPlots(lf_fp_sam2)
|
|
|
|
outfile_bp = paste0("boxplots_TEST_", my_sample_name, ".pdf")
|
|
output_boxplot_stats = paste0(outdir_plots, outfile_bp); output_boxplot_stats
|
|
pdf(output_boxplot_stats, width=22, height=16)
|
|
|
|
#med_names = c("eotaxin3", "il12p70", "itac", "il13")
|
|
#lf_test = lf_fp_npa[lf_fp_npa$mediator%in%med_names,]
|
|
|
|
#baz=cowplot::plot_grid(plotlist=foo, align = 'hv', ncol=2, nrow=2)
|
|
foo_annot = annotate_figure(foo
|
|
, top = text_grob(my_sample_name
|
|
, color = "blue"
|
|
, face = "bold"
|
|
, size = 14)
|
|
, bottom = text_grob("Mosaic data\nFlu positive adults (n=133)"
|
|
, color = "blue"
|
|
, hjust = 1, x = 0.98
|
|
, face = "italic"
|
|
, size = 10)
|
|
, left = text_grob("Levels (pg/ml)"
|
|
, color = "black"
|
|
, rot = 90
|
|
, size = 18)
|
|
)
|
|
foo_annot
|
|
dev.off()
|
|
##################################################################
|