26 lines
849 B
R
Executable file
26 lines
849 B
R
Executable file
#!/usr/bin/Rscript
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getwd()
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setwd("~/git/mosaic_2020/")
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getwd()
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############################################################
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# TASK: unpaired (time) analysis of mediators: SAM
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############################################################
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#=============
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# Input
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#=============
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source("data_extraction_mediators.R")
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#%%========================================================
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# data assignment for stats
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wf = sam_df_adults_clean[sam_df_adults_clean$flustat == 1,]
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lf = sam_adults_lf[sam_adults_lf$flustat == 1,]
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#%%========================================================
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table(metadata_all$flustat[metadata_all$adult == 1])
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aki_flu = read.csv(file.choose())
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aki_flu_sub = unique(aki_flu$Subject.ID)
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aki_flu_sub%in%wf$mosaic
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sub_mis = wf$mosaic[!wf$mosaic%in%aki_flu_sub]; sub_mis
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check = wf[wf$mosaic == sub_mis,]
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check2 = wf[wf$age>=18,] #!hmmm
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