diff --git a/flu_stats_unpaired_sam.R b/flu_stats_unpaired_sam.R index a3b9ff1..2c0c67e 100755 --- a/flu_stats_unpaired_sam.R +++ b/flu_stats_unpaired_sam.R @@ -19,7 +19,7 @@ source("data_extraction_formatting.R") metadata_all$mosaic[metadata_all$adult==1 & metadata_all$age<=18] #============= -# Output: unpaired analysis of time for sam +# Output #============= outfile_name = paste0("flu_stats_time_unpaired_", my_sample_type, ".csv") flu_stats_time_unpaired = paste0(outdir_stats, outfile_name) diff --git a/flu_stats_unpaired_serum.R b/flu_stats_unpaired_serum.R index 9fa2033..b61e032 100755 --- a/flu_stats_unpaired_serum.R +++ b/flu_stats_unpaired_serum.R @@ -16,7 +16,7 @@ source("data_extraction_formatting.R") metadata_all$mosaic[metadata_all$adult==1 & metadata_all$age<=18] #============= -# Output: unpaired analysis of time for serum +# Output #============= outfile_name = paste0("flu_stats_time_unpaired_", my_sample_type, ".csv") flu_stats_time_unpaired = paste0(outdir_stats, outfile_name) diff --git a/read_data.R b/read_data.R index 9237058..0cec4e9 100755 --- a/read_data.R +++ b/read_data.R @@ -15,7 +15,7 @@ ifelse(!dir.exists(outdir), dir.create(outdir), FALSE) outdir_stats = paste0(maindir, "output/stats/") ifelse(!dir.exists(outdir_stats), dir.create(outdir_stats), FALSE) -outdir_plots = paste0(maindir, "output/plots") +outdir_plots = paste0(maindir, "output/plots/") ifelse(!dir.exists(outdir_plots), dir.create(outdir_plots), FALSE) ######################################################################## # static file read: csv