diff --git a/stats_check.R b/stats_check.R new file mode 100755 index 0000000..4bc5f5e --- /dev/null +++ b/stats_check.R @@ -0,0 +1,85 @@ +#!/usr/bin/Rscript +############################################################ +# TASK: to check unpaired stats from WF data +############################################################ +#============= +# Input +#============= +source("data_extraction_formatting.R") +#%%======================================================== +# data assignment for stats +wf_npa = npa_df_adults_clean[npa_df_adults_clean$flustat == 1,] +wf_sam = sam_df_adults_clean[sam_df_adults_clean$flustat == 1,] +wf_serum = serum_df_adults_clean[serum_df_adults_clean$flustat == 1,] +############################################################ +#========= +# t1 +#========= +wilcox.test(wf_npa$eotaxin3_npa1[wf_npa$obesity == 1], wf_npa$eotaxin3_npa1[wf_npa$obesity == 0], paired = F) +length(wf_npa$eotaxin3_npa1) - sum(is.na(wf_npa$eotaxin3_npa1)) + +wilcox.test(wf_npa$il12p70_npa1[wf_npa$obesity == 1], wf_npa$il12p70_npa1[wf_npa$obesity == 0], paired = F) +length(wf_npa$il12p70_npa1) - sum(is.na(wf_npa$il12p70_npa1)) + +#========= +# t2 +#========= +wilcox.test(wf_npa$il4_npa2[wf_npa$obesity == 1], wf_npa$il4_npa2[wf_npa$obesity == 0], paired = F) +length(wf_npa$il4_npa2) - sum(is.na(wf_npa$il4_npa2)) + +#========= +# t3 +#========= +wilcox.test(wf_npa$ip10_npa3[wf_npa$obesity == 1], wf_npa$ip10_npa3[wf_npa$obesity == 0], paired = F) +length(wf_npa$ip10_npa3) - sum(is.na(wf_npa$ip10_npa3)) +################################################################### +########## +# sam +########## +#========= +# t1 +#========= +wilcox.test(wf_sam$eotaxin3_sam1[wf_sam$obesity == 1], wf_sam$eotaxin3_sam1[wf_sam$obesity == 0], paired = F) +length(wf_sam$eotaxin3_sam1) - sum(is.na(wf_sam$eotaxin3_sam1)) + +wilcox.test(wf_sam$il12p70_sam1[wf_sam$obesity == 1], wf_sam$il12p70_sam1[wf_sam$obesity == 0], paired = F) +length(wf_sam$il12p70_sam1) - sum(is.na(wf_sam$il12p70_sam1)) + +#========= +# t2 +#========= +wilcox.test(wf_sam$il4_sam2[wf_sam$obesity == 1], wf_sam$il4_sam2[wf_sam$obesity == 0], paired = F) +length(wf_sam$il4_sam2) - sum(is.na(wf_sam$il4_sam2)) + +#========= +# t3 +#========= +wilcox.test(wf_sam$tnfr1_sam3[wf_sam$obesity == 1], wf_sam$tnfr1_sam3[wf_sam$obesity == 0], paired = F) +length(wf_sam$tnfr1_sam3) - sum(is.na(wf_sam$tnfr1_sam3)) + +################################################################### +########## +# serum +########## + +#========= +# t1 +#========= +wilcox.test(wf_serum$eotaxin3_serum1[wf_serum$obesity == 1], wf_serum$eotaxin3_serum1[wf_serum$obesity == 0], paired = F) +length(wf_serum$eotaxin3_serum1) - sum(is.na(wf_serum$eotaxin3_serum1)) + +wilcox.test(wf_serum$ifna2a_serum1[wf_serum$obesity == 1], wf_serum$ifna2a_serum1[wf_serum$obesity == 0], paired = F) +length(wf_serum$ifna2a_serum1) - sum(is.na(wf_serum$ifna2a_serum1)) + +#========= +# t2 +#========= +wilcox.test(wf_serum$il5_serum2[wf_serum$obesity == 1], wf_serum$il5_serum2[wf_serum$obesity == 0], paired = F) +length(wf_serum$il5_serum2) - sum(is.na(wf_serum$il5_serum2)) + +#========= +# t3 +#========= +wilcox.test(wf_serum$rantes_serum3[wf_serum$obesity == 1], wf_serum$rantes_serum3[wf_serum$obesity == 0], paired = F) +length(wf_serum$rantes_serum3) - sum(is.na(wf_serum$rantes_serum3)) +