From 49b7f0e5643bc7a7e538fc5b5df91000622d928a Mon Sep 17 00:00:00 2001
From: Tanushree Tunstall <tanu@tunstall.in>
Date: Thu, 27 Apr 2023 14:06:41 +0100
Subject: [PATCH] added TO_DO in mosaic from panino

---
 TO_DO | 100 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 100 insertions(+)
 create mode 100644 TO_DO

diff --git a/TO_DO b/TO_DO
new file mode 100644
index 0000000..350b113
--- /dev/null
+++ b/TO_DO
@@ -0,0 +1,100 @@
+# clinical unpaired stats: DONE
+# chi sq or similar test for binary outcome vars : DONE
+# regression analysis
+# redo obesity analysis without asthmatics: although you can account for this in reg
+but just do it for completion!: DONE
+
+
+=================================================================================
+death ~ obesity + il12p70_npa1
+
+Call:
+glm(formula = p_form, family = binomial, data = my_reg_data_med)
+
+Deviance Residuals: 
+    Min       1Q   Median       3Q      Max  
+-1.1117  -0.5249  -0.4427  -0.4302   2.2027  
+
+Coefficients:
+             Estimate Std. Error z value Pr(>|z|)    
+(Intercept)  -2.36991    0.41816  -5.668 1.45e-08 ***
+obesity       0.18899    0.63841   0.296   0.7672    
+il12p70_npa1  0.12389    0.04843   2.558   0.0105 *  
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+(Dispersion parameter for binomial family taken to be 1)
+
+    Null deviance: 89.632  on 104  degrees of freedom
+Residual deviance: 82.487  on 102  degrees of freedom
+  (28 observations deleted due to missingness)
+AIC: 88.487
+
+Number of Fisher Scoring iterations: 4
+
+
+##############################
+=================================================================================
+death ~ il12p70_npa1
+
+Call:
+glm(formula = p_form, family = binomial, data = my_reg_data_med)
+
+Deviance Residuals: 
+    Min       1Q   Median       3Q      Max  
+-1.0765  -0.4935  -0.4376  -0.4376   2.1880  
+
+Coefficients:
+             Estimate Std. Error z value Pr(>|z|)    
+(Intercept)  -2.33522    0.39856  -5.859 4.65e-09 ***
+il12p70_npa1  0.12699    0.04741   2.679  0.00739 ** 
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+(Dispersion parameter for binomial family taken to be 1)
+
+    Null deviance: 89.632  on 104  degrees of freedom
+Residual deviance: 82.574  on 103  degrees of freedom
+  (28 observations deleted due to missingness)
+AIC: 86.574
+
+Number of Fisher Scoring iterations: 4
+
+Waiting for profiling to be done...
+                     OR      2.5 %   97.5 %
+(Intercept)  0.09678937 0.04094537 0.198725
+il12p70_npa1 1.13540367 1.03471817 1.249931
+[1] 105
+
+=================================================================================
+death ~ il1_npa1
+
+Call:
+glm(formula = p_form, family = binomial, data = my_reg_data_med)
+
+Deviance Residuals: 
+    Min       1Q   Median       3Q      Max  
+-1.3883  -0.4893  -0.4793  -0.4792   2.1073  
+
+Coefficients:
+              Estimate Std. Error z value Pr(>|z|)    
+(Intercept) -2.1068569  0.3347016  -6.295 3.08e-10 ***
+il1_npa1     0.0010360  0.0003762   2.754  0.00588 ** 
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+(Dispersion parameter for binomial family taken to be 1)
+
+    Null deviance: 89.632  on 104  degrees of freedom
+Residual deviance: 82.215  on 103  degrees of freedom
+  (28 observations deleted due to missingness)
+AIC: 86.215
+
+Number of Fisher Scoring iterations: 4
+
+Waiting for profiling to be done...
+                   OR      2.5 %    97.5 %
+(Intercept) 0.1216196 0.05949241 0.2236722
+il1_npa1    1.0010366 1.00030121 1.0018148
+[1] 105
+=================================================================================
\ No newline at end of file