diff --git a/boxplots_stat_ob_paper.R b/boxplots_stat_ob_paper.R index 08f073b..98884c7 100644 --- a/boxplots_stat_ob_paper.R +++ b/boxplots_stat_ob_paper.R @@ -19,6 +19,47 @@ getwd() source("boxplot_stat_function.R") source("plot_data_ob_paper.R") + + +# numbers +table(vl_lf_plot_df$mosaic) +length(unique(vl_lf_plot_df$mosaic)) +table(vl_lf_plot_df$obesity, vl_lf_plot_df$timepoint) +table(vl_lf_plot_df$obesity, vl_lf_plot_df$timepoint, vl_lf_plot_df$mediator) + +length(unique(npa_lf_plot_df$mosaic)) +table(npa_lf_plot_df$obesity, npa_lf_plot_df$timepoint, npa_lf_plot_df$mediator) +table(npa_lf_plot_df$mediator, npa_lf_plot_df$obesity, npa_lf_plot_df$timepoint) + +ob_grp_npa = npa_wf[npa_wf$obesity==1,] +nob_grp_npa = npa_wf[npa_wf$obesity==0,] + +wilcox.test(ob_grp_npa$il1_npa1, + nob_grp_npa$il1_npa1, paired = F) +wilcox.test(ob_grp_npa$il1_npa2, + nob_grp_npa$il1_npa2, paired = F) + +wilcox.test(ob_grp_npa$il6_npa1, + nob_grp_npa$il6_npa1, paired = F) +wilcox.test(ob_grp_npa$il6_npa2, + nob_grp_npa$il6_npa2, paired = F) + +wilcox.test(ob_grp_npa$il8_npa1, + nob_grp_npa$il8_npa1, paired = F) +wilcox.test(ob_grp_npa$il8_npa2, + nob_grp_npa$il8_npa2, paired = F) + +wilcox.test(ob_grp_npa$ip10_npa1, + nob_grp_npa$ip10_npa1, paired = F) +wilcox.test(ob_grp_npa$ip10_npa2, + nob_grp_npa$ip10_npa2, paired = F) + +length(unique(serum_lf_plot_df$mosaic)) +table(serum_lf_plot_df$obesity, serum_lf_plot_df$timepoint, serum_lf_plot_df$mediator) +table(serum_lf_plot_df$mediator, serum_lf_plot_df$obesity, serum_lf_plot_df$timepoint) + + + #============= # Output #=============