tanu/funpdbe-validator
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Refactoring

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This commit is contained in:
mvaradi 2018-10-14 10:46:47 +01:00
parent 33b484085f
commit e612b52087
2 changed files with 6 additions and 6 deletions
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8
tests/test_residue_index.py
View file

@ -18,7 +18,7 @@ License.
import json
from unittest import TestCase
from validator.residue_index import CheckResidueIndices
from validator.residue_index import ResidueIndexes
with open("data/test_data.json", "r") as mock_data_file:
mock_data = json.load(mock_data_file)
@ -46,7 +46,7 @@ def mock_compare_residue_number(self, foo, bar):
class TestCheckResidueIndices(TestCase):
def setUp(self):
self.cri = CheckResidueIndices(mock_data)
self.cri = ResidueIndexes(mock_data)
def test_loop_chains(self):
self.cri._get_residue_numbering = mock_get_residue_numbering_false
@ -60,7 +60,7 @@ class TestCheckResidueIndices(TestCase):
def test_set_pdb_id(self):
self.assertIsNotNone(self.cri._set_pdb_id())
bad_cri = CheckResidueIndices(mock_data_no_pdb_id)
bad_cri = ResidueIndexes(mock_data_no_pdb_id)
self.assertIsNone(bad_cri._set_pdb_id())
def test_check_numbering(self):
@ -85,7 +85,7 @@ class TestCheckResidueIndices(TestCase):
self.assertFalse(result)
def test_with_bad_numbering(self):
cri_with_bad_numbering = CheckResidueIndices(mock_data_bad_numbering)
cri_with_bad_numbering = ResidueIndexes(mock_data_bad_numbering)
result = cri_with_bad_numbering.check_every_residue()
self.assertFalse(result)

4
validator/residue_index.py
View file

@ -19,7 +19,7 @@ import json
import requests
class CheckResidueIndices(object):
class ResidueIndexes(object):
"""
This class has all the methods required for validating the
residue indices that are in the user submitted data.
@ -29,7 +29,7 @@ class CheckResidueIndices(object):
indices
Example usage:
check_indexes = CheckResidueIndices(your_json_object)
check_indexes = ResidueIndexes(your_json_object)
if check_indexes.check_every_residue():
# all residues in every chain are correctly indexed
"""