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Updating the test paths

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This commit is contained in:
mvaradi 2018-10-12 17:53:13 +01:00
parent 8abd4ec9f8
commit adf22847de
3 changed files with 113 additions and 33 deletions
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41
data/test_data.json
View file

@ -7,42 +7,38 @@
"pdb_id": "2gs6",
"chains": [
{
"additional_chain_annotations": {},
"residues": [
{
"additional_residue_annotations": {},
"pdb_res_label": 811,
"pdb_res_label": "811",
"aa_type": "HIS",
"site_data": [
{
"confidence_score": 1,
"site_id_ref": 811,
"site_id_ref": 1,
"confidence_classification": "high",
"raw_score": 1
}
]
},
{
"additional_residue_annotations": {},
"pdb_res_label": 812,
"pdb_res_label": "812",
"aa_type": "ARG",
"site_data": [
{
"confidence_score": 1,
"site_id_ref": 812,
"site_id_ref": 2,
"confidence_classification": "high",
"raw_score": 1
}
]
},
{
"additional_residue_annotations": {},
"pdb_res_label": 813,
"pdb_res_label": "813",
"aa_type": "ASP",
"site_data": [
{
"confidence_score": 1,
"site_id_ref": 813,
"site_id_ref": 2,
"confidence_classification": "high",
"raw_score": 1
}
@ -54,31 +50,18 @@
],
"sites": [
{
"additional_site_annotations": {},
"source_release_date": "06/20/2006",
"site_id": 811,
"label": "HRD motif",
"source_accession": "2gs6",
"source_database": "pdb"
"site_id": 1,
"label": "HRD motif"
},
{
"additional_site_annotations": {},
"source_release_date": "06/20/2006",
"site_id": 812,
"label": "HRD motif",
"source_accession": "2gs6",
"source_database": "pdb"
"site_id": 2,
"label": "HRD motif"
},
{
"additional_site_annotations": {},
"source_release_date": "06/20/2006",
"site_id": 813,
"label": "HRD motif",
"source_accession": "2gs6",
"source_database": "pdb"
"site_id": 3,
"label": "HRD motif"
}
],
"additional_entry_annotations": {},
"evidence_code_ontology": [
{
"eco_term": "computational combinatorial evidence",

88
data/test_data_invalid.json Normal file
View file

@ -0,0 +1,88 @@
{
"data_resource": "ProKinO",
"resource_version": "2.0",
"software_version": "2.0",
"resource_entry_url": "http://vulcan.cs.uga.edu/prokino/",
"release_date": "10/02/2017",
"pdb_id": "2gs6",
"chains": [
{
"additional_chain_annotations": {},
"residues": [
{
"additional_residue_annotations": {},
"pdb_res_label": 811,
"aa_type": "HIS",
"site_data": [
{
"confidence_score": 1,
"site_id_ref": 811,
"confidence_classification": "high",
"raw_score": 1
}
]
},
{
"additional_residue_annotations": {},
"pdb_res_label": 812,
"aa_type": "ARG",
"site_data": [
{
"confidence_score": 1,
"site_id_ref": 812,
"confidence_classification": "high",
"raw_score": 1
}
]
},
{
"additional_residue_annotations": {},
"pdb_res_label": 813,
"aa_type": "ASP",
"site_data": [
{
"confidence_score": 1,
"site_id_ref": 813,
"confidence_classification": "high",
"raw_score": 1
}
]
}
],
"chain_label": "A"
}
],
"sites": [
{
"additional_site_annotations": {},
"source_release_date": "06/20/2006",
"site_id": 811,
"label": "HRD motif",
"source_accession": "2gs6",
"source_database": "pdb"
},
{
"additional_site_annotations": {},
"source_release_date": "06/20/2006",
"site_id": 812,
"label": "HRD motif",
"source_accession": "2gs6",
"source_database": "pdb"
},
{
"additional_site_annotations": {},
"source_release_date": "06/20/2006",
"site_id": 813,
"label": "HRD motif",
"source_accession": "2gs6",
"source_database": "pdb"
}
],
"additional_entry_annotations": {},
"evidence_code_ontology": [
{
"eco_term": "computational combinatorial evidence",
"eco_code": "ECO_0000246"
}
]
}