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Getting the latest FunPDBe schema dynamically

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This commit is contained in:
mvaradi 2020-10-20 14:28:56 +01:00
parent 136aad427d
commit 47f052bb9c
1 changed files with 14 additions and 5 deletions
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19
validator/validator.py
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@ -18,6 +18,8 @@ License.
import jsonschema import jsonschema
import json import json
import re import re
import requests
class Validator(object): class Validator(object):
@ -37,6 +39,7 @@ class Validator(object):
self.schema = None self.schema = None
self.json_data = None self.json_data = None
self.error_log = None self.error_log = None
self.json_url = 'https://gitlab.ebi.ac.uk/pdbe-kb/funpdbe/funpdbe-schema/raw/master/funpdbe_schema.json'
def load_json(self, path_to_file): def load_json(self, path_to_file):
""" """
@ -46,13 +49,19 @@ class Validator(object):
""" """
self.json_data = self._parse_json(path_to_file) self.json_data = self._parse_json(path_to_file)
def load_schema(self, path_to_schema): def load_schema(self):
""" """
Loads the FunPDBe schema Getting JSON schema
:param path_to_schema: String, path to FunPDBe schema :return: JSON, schema or None
:return: None
""" """
self.schema = self._parse_json(path_to_schema) response = requests.get(self.json_url)
if response.status_code == 404:
print('Schema not found')
return None
try:
self.schema = json.loads(response.text)
except ValueError as valerr:
print(valerr)
def basic_checks(self): def basic_checks(self):
""" """